Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_M24
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0582 + 30124280-30124487,30124600-30124698,30125438-301255...    33   0.21 
01_06_1828 - 40174446-40174543,40175031-40175171,40176518-401767...    29   4.5  
05_05_0020 - 21560896-21561352,21563399-21563480,21564143-215642...    28   7.9  
02_02_0149 - 7182562-7182891,7182989-7183575,7185334-7185433,718...    28   7.9  
01_05_0271 + 20276965-20278674                                         28   7.9  
01_02_0062 - 10718495-10719301,10719469-10719699                       28   7.9  

>02_05_0582 +
           30124280-30124487,30124600-30124698,30125438-30125589,
           30125708-30125896,30126001-30126111,30126370-30126536,
           30127923-30128184
          Length = 395

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -2

Query: 655 NTGRVNN*CIHPVGLHQLNKMATLNTILFV-FMILGAFVKAQRPFYAGLSPIGYP-AVET 482
           +TG  NN  +  VG +Q+ K+A   TI+   FMI    V +Q+     +   G   A  T
Sbjct: 211 STGLANNFPLFSVGFYQMAKIAVTPTIVVAEFMIFQKRVSSQKVITLAIVSFGVAVATVT 270

Query: 481 DLLSNRFG 458
           DL  N FG
Sbjct: 271 DLEFNFFG 278


>01_06_1828 -
           40174446-40174543,40175031-40175171,40176518-40176719,
           40176815-40176914,40177029-40177081,40177951-40178097,
           40178184-40178341,40178509-40178599,40179415-40179522,
           40179815-40179952,40180154-40180246,40180342-40180434,
           40180528-40180637,40181087-40181135,40181324-40181437,
           40181530-40181589,40181674-40181742,40182034-40182135,
           40182235-40182263,40182348-40182630,40183574-40183960
          Length = 874

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 674 GR*VCIQHGSCKQLVHSPSRPSSAKQD--GNIKH-HTFRFYD 558
           G  +C +     QLVH P RP+ A+ D  G   H    RFYD
Sbjct: 79  GSDICTRRPLVLQLVHQPRRPADAEADEWGEFLHLPGRRFYD 120


>05_05_0020 -
           21560896-21561352,21563399-21563480,21564143-21564263,
           21564424-21565074,21565206-21565338,21565677-21565728,
           21566115-21566244,21567241-21567300,21567444-21567536,
           21567795-21567919,21568263-21568353,21568828-21569127,
           21569415-21570038
          Length = 972

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 472 SNRFGEDEEAPIEVRGDG-NLINRLNSLPIENQPFWYLNWKAYEALRKRP 326
           S+R+ E     I V G G N +NR+    ++   FW +N   ++A+R  P
Sbjct: 110 SHRYSEPRIKVIGVGGGGSNAVNRMIESDMKGVEFWIVN-TDFQAMRMSP 158


>02_02_0149 -
           7182562-7182891,7182989-7183575,7185334-7185433,
           7185547-7185563,7185928-7186369,7186501-7186629
          Length = 534

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 671 R*VCIQHGSCKQ-LVHSPSRPSSAKQDGNIK 582
           R +C  H  CK  ++H   +P++   DGN+K
Sbjct: 125 RAICYLHHDCKSPIIHRDIKPTNILLDGNLK 155


>01_05_0271 + 20276965-20278674
          Length = 569

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 514 GQRKTVFGLLQTLPES*KRKVWCLMLPSC 600
           GQ K  +GL+QT+P      VW  +L  C
Sbjct: 472 GQLKEAYGLIQTMPAPADSGVWGALLWGC 500


>01_02_0062 - 10718495-10719301,10719469-10719699
          Length = 345

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +2

Query: 2   GTYKINLIYNNMARHLCLLNTDTAN*IFSSIHVRHVVFYGSMMLSNNIDFDKA 160
           G Y  N  Y N   +L L N+D A  + S+  ++HV  Y       NIDF +A
Sbjct: 268 GDYLDNSYYKNNKNNLVLFNSDWAL-VGSNATLQHVNEYAENGTLWNIDFAQA 319


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,411,743
Number of Sequences: 37544
Number of extensions: 348501
Number of successful extensions: 808
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)