Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_M19
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    27   3.8  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   5.0  

>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 378 RFLSTYQFYLRVTSSATSEDINLDYFSNKAK 286
           R +S    Y+RV S+    +INL YF + AK
Sbjct: 497 RAVSLQPQYVRVRSNMAVSNINLGYFEDAAK 527


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -2

Query: 641 FRSTLPLLYITFVPCSFSHISRPVQ-PCCCGCSASRDVNLYIFTKNFL*KRSNLNHGFIE 465
           FR+ LP  Y  F P + +H+ RP + P   G S S       FT     +   L  GF  
Sbjct: 101 FRTILPEDYKKFYPNAKTHMGRPQKIPHTVGLSKSTRKERKQFTPE---EDERLLEGFFL 157

Query: 464 H-ECYRAMTPQFNL 426
           H  C+  ++   NL
Sbjct: 158 HGPCWTRISKDANL 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,848,672
Number of Sequences: 5004
Number of extensions: 55795
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)