Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_M17
(425 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 29 0.40
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 26 2.1
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 25 3.7
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 25 3.7
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo... 25 4.9
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 25 6.5
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 6.5
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 24 8.6
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 24 8.6
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 24 8.6
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces... 24 8.6
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 28.7 bits (61), Expect = 0.40
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = -1
Query: 233 PYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWDPRA 60
P HS LP+E S+DNT T + NEM P +N ++ +H P A
Sbjct: 103 PSFHSFGLPQEDSQDNTQTYSTPYTTM-NPSNEMHPYPPATFENNYSVLPDHSSQPNA 159
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 26.2 bits (55), Expect = 2.1
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -3
Query: 420 ELIPYHLSEFEWT*LTLKYK*NVLFNSQNSINPKSGIK 307
ELI Y L+ F+ + L N +FNSQNS+ P+ I+
Sbjct: 200 ELIVYELNFFKESTGIL----NTIFNSQNSLTPQKKIQ 233
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 3.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -1
Query: 350 YLTRKIALIPRVALSRFYNKIVIADDGSTIVALHQDYDFPYEHSRALPEETS 195
YL K +P V + N+IV DG+ I+AL+ +H R + + S
Sbjct: 197 YLKAKELHLPLVHIFNVENEIVENCDGNHILALNFSLQTLLQHGRIVRKSNS 248
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 25.4 bits (53), Expect = 3.7
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -1
Query: 323 PRVALSRFYNKIVIADDGSTI 261
PR+ +S FY K+ + DG+T+
Sbjct: 384 PRLRISSFYVKLACSPDGATL 404
>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 4.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 114 SCKFRFHFIEDSFNFI*IGH 173
+C H I D+FNFI +GH
Sbjct: 169 ACAAGCHAIGDAFNFIKLGH 188
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 24.6 bits (51), Expect = 6.5
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = -1
Query: 188 NTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWDPRARDKKAKKTEM 30
+T ++ D E+ + E + E KQLSN EH R + +A K M
Sbjct: 313 STNQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQHSRNQKLEAAKQRM 365
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 6.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 245 DYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRV 144
DY +EH + E + KD + K+ +E+ RV
Sbjct: 234 DYHNTFEHICKILENSVKDKFIEKLVSKEELTRV 267
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 24.2 bits (50), Expect = 8.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -1
Query: 281 ADDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEV 153
+D +V L + D ++ + L EE+ +DN VL LDE+
Sbjct: 75 SDAMEMLVFLRKMADVFIDYFKELQEESIRDNFVLVYELLDEI 117
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 709
Score = 24.2 bits (50), Expect = 8.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 92 LTTEHRWDPRARDKKAKK 39
L + RW RARD+K +K
Sbjct: 23 LKSSRRWTDRARDRKRQK 40
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 24.2 bits (50), Expect = 8.6
Identities = 7/29 (24%), Positives = 19/29 (65%)
Frame = -1
Query: 155 VKRVFNEMKPEFARKQLSNLTLTTEHRWD 69
+K++F++ + + + ++ +L EH+WD
Sbjct: 113 LKQIFDKSQSIYIPRGINTESLNREHKWD 141
>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 378
Score = 24.2 bits (50), Expect = 8.6
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Frame = -1
Query: 239 DFPYEHSRALPEETSKDNTVLKMTDLDE-------VKRVFNEMKPEFARKQLSNLTLTTE 81
D PY+ R L +E V+ MTD E V R F P++ + S + +
Sbjct: 199 DIPYDPFRKLSDENKAYGFVISMTDYYETLPSLWNVTRDFIHQNPQYLAQNNSLDFIVND 258
Query: 80 HR 75
H+
Sbjct: 259 HQ 260
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,711
Number of Sequences: 5004
Number of extensions: 25531
Number of successful extensions: 89
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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