Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_M16
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    27   1.1  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    25   2.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   2.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    25   3.3  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   5.8  
SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    24   5.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    24   7.6  
SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    24   7.6  

>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 317 SYNANNIELINAAFFVFFLFKKNNPNSYLQLFLSTELYSDY 195
           ++N + ++      FV F  KK   N+ LQL    ELYSDY
Sbjct: 64  TFNMHILQTHTGMKFVLFTEKKTT-NARLQLQKFYELYSDY 103


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +2

Query: 146 YLMXIFKMFLXLYVYFSSRNTTQLKETIED 235
           YL  ++K+ +   V F  +  + +KET+E+
Sbjct: 148 YLNYMYKLLIEAGVEFEKKELSHIKETVEE 177


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 1   SLGQVTSXMLLFICFPFQLTSAIKLXFLKKSLHQNH 108
           S G V S  ++F     Q  S + + FLKKSL + H
Sbjct: 462 SRGSVLSNAIVFTAI--QTMSEVDIIFLKKSLFKEH 495


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 259 LKKIILIPIFNCFFQLS 209
           L+ ++L  IF CFF+LS
Sbjct: 665 LRSLLLARIFQCFFELS 681


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 290 INAAFFVFFLFKKNNPNSYL 231
           INA  + FF +KK N  +Y+
Sbjct: 530 INATLYTFFTYKKLNTPNYV 549


>SPBC409.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 120

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 133 IXMHFKTKRDFDAKIF 86
           + +HFKTK D D + F
Sbjct: 18  VRIHFKTKEDLDIRAF 33


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 314  YNANNIELINAAFFVFFLFKKNNPNSYLQ 228
            +N NN   +    FVF +  KN    Y+Q
Sbjct: 2066 FNDNNYRTVANTLFVFGVILKNRGMEYIQ 2094


>SPCC1393.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 956

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 11/51 (21%), Positives = 21/51 (41%)
 Frame = +3

Query: 39  LFSVSAHISNQTXISQKIFASKSRFVLKCIXIKXYST*XSYLKCF*XYTCI 191
           + SV+    N    ++ +      F+LKC  +K Y    S +     + C+
Sbjct: 829 IHSVTRINENSVPFNKNLLPHSLEFILKCSKVKSYDISPSSINSKEAFVCL 879


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,033,832
Number of Sequences: 5004
Number of extensions: 15371
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)