Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_M13
(305 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 29 0.20
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 0.47
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 27 0.47
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 27 0.47
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 0.62
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 24 4.4
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 4.4
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 4.4
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 24 5.8
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 24 5.8
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 23 7.7
SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|... 23 7.7
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 23 7.7
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 28.7 bits (61), Expect = 0.20
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = +1
Query: 121 HMWVYQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 234
+M YQ TP HE WT SS L H + PS+ +
Sbjct: 152 YMRAYQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 0.47
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 114 SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 212
SF Y L NN++L +S + ++ F++ PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 27.5 bits (58), Expect = 0.47
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 108 KEVPQYKLITPAVVSERLKVRG 43
KEVP +K I+ +V+ +R+K+ G
Sbjct: 32 KEVPAFKFISVSVLVDRMKING 53
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 27.5 bits (58), Expect = 0.47
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = -3
Query: 108 KEVPQYKLITPAVVSERLKVRG 43
KEVP +K I+ +V+ +R+K+ G
Sbjct: 32 KEVPAFKFISVSVLVDRMKING 53
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 0.62
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 240 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 142
K HR DP+ P RR GP + V + +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 24.2 bits (50), Expect = 4.4
Identities = 13/51 (25%), Positives = 27/51 (52%)
Frame = -3
Query: 252 PNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPHMRNCXKEV 100
PNS+K+ +R K P++ +S P+ +T +R + +RN +++
Sbjct: 153 PNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRNLQEQL 200
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 4.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 135 SNNTWLFNLSRTFPLDHFFFLAL 203
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 4.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 193 SWLCRHRILPSSSVFFEAVW 252
+WL + ++PSSS F + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 23.8 bits (49), Expect = 5.8
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +3
Query: 69 RQQV*LACTVGLPXYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 212
R V + C L + F +G+ N T P +F+ L PPP
Sbjct: 35 RWVVVIICIAAL-IFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 23.8 bits (49), Expect = 5.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 88 LVLWDFLXTVSHMWVYQTT 144
LVLW FL + +W+Y T
Sbjct: 256 LVLWLFLSFLLALWIYYLT 274
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 287 KDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEV 183
K+ G EG G + +EE R+R + + E+
Sbjct: 62 KNKESPGLEGKGNLDDQGIDEENRVRLERMNDLEI 96
>SPCC24B10.12 |||CGI121 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 174
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +1
Query: 88 LVLWDFLXTVSHMWVYQTTPGCSTCHE 168
++L F T H++VY+ C+ HE
Sbjct: 1 MILPLFPETQVHVFVYENVSNCAAIHE 27
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 137 KQHLVVQLVTNFSFGPLLLLGFAAT 211
++++VVQ + F PL+LL FA++
Sbjct: 48 EENMVVQFLKQFVKDPLILLLFASS 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,236,094
Number of Sequences: 5004
Number of extensions: 24530
Number of successful extensions: 107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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