Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_M13
         (305 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal prote...    38   0.002
Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical p...    29   0.48 
AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine re...    29   0.85 
Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical p...    27   3.4  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   3.4  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   3.4  
AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical...    26   4.5  
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    26   4.5  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched relat...    26   6.0  
Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>U41558-4|AAK39246.1|  117|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 25 protein.
          Length = 117

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -3

Query: 108 KEVPQYKLITPAVVSERLKVR 46
           KEV  YKLITP+VVSERLKVR
Sbjct: 56  KEVITYKLITPSVVSERLKVR 76



 Score = 29.5 bits (63), Expect = 0.48
 Identities = 19/57 (33%), Positives = 21/57 (36%)
 Frame = -2

Query: 283 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKL 113
           MPPKKD K     P                            LNN VLFD+ TY+KL
Sbjct: 1   MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKL 54


>Z81486-10|CAB03993.3|  681|Caenorhabditis elegans Hypothetical
           protein C53A5.13 protein.
          Length = 681

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 272 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 171
           E REG G    +   +  RIRW+   +EE+V R+
Sbjct: 25  EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58


>AF016428-2|AAO26002.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 65 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 53  FNLSDTTAGVISLYCGTSLXQFLIC 127
           F+LSDT   ++ L+CG      +IC
Sbjct: 14  FDLSDTIVNIVELFCGIPSLVMMIC 38


>Z75554-11|CAA99961.1|  301|Caenorhabditis elegans Hypothetical
           protein ZC455.8a protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 88  LVLWDFLXTVSHMWVYQTTPGCSTC 162
           LVLW  L  V + WV   +P   TC
Sbjct: 136 LVLWGMLEDVMYFWVCNISPFEKTC 160


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 231 RRRRKDPVAAKPRRRSGP 178
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 231 RRRRKDPVAAKPRRRSGP 178
           RRR+  P+ A PRRR  P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495


>AL033514-35|CAE18033.1|  106|Caenorhabditis elegans Hypothetical
           protein Y75B8A.37 protein.
          Length = 106

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +1

Query: 229 SVFFEAVWPKPSR 267
           S+FF A+WPKP R
Sbjct: 71  SLFFVAIWPKPVR 83


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/33 (36%), Positives = 14/33 (42%), Gaps = 4/33 (12%)
 Frame = +1

Query: 133 YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 219
           YQ    CS    TC   F W     W CR R++
Sbjct: 365 YQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 246 SLKKHRRRRKDPVAAKPRRRSGPKEK 169
           S  +  RRR+ P AA PRRR  P+ +
Sbjct: 473 SKSRSPRRRRSPAAA-PRRRQSPQRR 497


>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical
           protein T01D3.3b protein.
          Length = 1011

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = +1

Query: 151 CSTCHELFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSRP 270
           C    + F+     +  C   +LP+ S+  E   PKP RP
Sbjct: 44  CRMQDDCFIGEICDNGFCCPNVLPTFSLQREPTSPKPKRP 83


>AC006670-2|ABC71822.1|  901|Caenorhabditis elegans Patched related
           family protein12, isoform a protein.
          Length = 901

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 47  RTFNLSDTTAGVISLYCGTSLXQFLICGFIKQHLVVQLVTNFS 175
           R   LS +      +  G SL  FLI GF+   +V  + T FS
Sbjct: 260 RVLTLSTSYVEAEVVRAGMSLLPFLIVGFVIMAIVSSVTTFFS 302


>Z47808-2|CAA87770.1|  415|Caenorhabditis elegans Hypothetical
           protein D2013.2 protein.
          Length = 415

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/37 (24%), Positives = 16/37 (43%)
 Frame = +1

Query: 88  LVLWDFLXTVSHMWVYQTTPGCSTCHELFLWTTSSSW 198
           L+ WD          ++T+  C  C++ F W   + W
Sbjct: 271 LMCWDMNCKRVETPEWKTSDCCQKCNQPFFWNLQAMW 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,020,231
Number of Sequences: 27780
Number of extensions: 140300
Number of successful extensions: 408
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)