Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_M10
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    37   0.003
SPBC25H2.07 |tif11||translation initiation factor eIF1A|Schizosa...    28   1.4  
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa...    27   3.2  
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   3.2  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.3  
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe...    26   4.3  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   5.6  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    26   5.6  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    25   7.5  

>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = -2

Query: 606 VYIPDRRRQTLADTXYVPQQENEV--YYPQQPENPIFSPTQATELADP 469
           VY+PD          Y+P+    V  YYPQQP  P+F  ++ TEL DP
Sbjct: 497 VYVPDAT-DAAKPQYYIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542


>SPBC25H2.07 |tif11||translation initiation factor
           eIF1A|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 138

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 385 LWYFRSGRRFGSLSNRYQSG*VQFDLFSGVSQLGRLSGAEDRVLWL 522
           L Y   G+ +  ++    +G ++   F GV +LG + G   + +W+
Sbjct: 26  LTYAEEGQMYAQVTKMLGNGRIEAACFDGVKRLGHIRGKLRKKVWI 71


>SPAC1805.05 |cki3||serine/threonine protein kinase
           Cki3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 439

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
 Frame = -3

Query: 251 SFQCSSDGEVGPQVVPEARLQLPTHTAQ------VEEASPQATPPPTVDPDRTKNWKP 96
           S     DG  G    P+ + Q  T +AQ      VE+ +PQ T P  VD  +     P
Sbjct: 360 SVATQKDGIPGKAASPQVQQQQQTSSAQQQQPQRVEQPAPQTTQPTQVDTQQAAKPAP 417


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 641 SPKPHRRLQRARCTYLIVAARPLPIPXTYRNKKTKSITLSNQRTRSS 501
           S   H    +    + +++   +P+P  YR    +  TLSN++T  S
Sbjct: 45  SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 166 TCAVCVGNCSRASGTTCGPTSPSE 237
           TCA+C+  C +     C   S  E
Sbjct: 83  TCAICIRQCHKCESNVCSMCSKQE 106


>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
 Frame = +1

Query: 142 VACGDASSTC-AVCVGNCSRASGTTCGPTSPSEEHWKEGGC 261
           +ACG A  TC AV  G    A      P   +E H   G C
Sbjct: 165 LACGSAIETCTAVVTGQVKNAFAVVRPPGHHAEPHKPGGFC 205


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 190 CSRASGTTCGPTSPSEEHWKEGGCRHSGW 276
           C+R +      T P  E+WKE      GW
Sbjct: 622 CTRGNQVQAFYTLPEYEYWKEANNNGRGW 650


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -3

Query: 191 QLPTHTAQVEEASPQAT---PPPTVDP-DRTKNWKPETXMEIETMSCFG 57
           +L  ++ +++E SP  +   PPP  +   R   W  E   E+    C+G
Sbjct: 105 ELANNSMEMQEISPNGSASLPPPVSESWRRIDRWAEENYYELYCQLCYG 153


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = -2

Query: 549 QENEVYYPQQPENPIFSPTQATELADPTE 463
           + N   YPQ  + P+  P  A    DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,830
Number of Sequences: 5004
Number of extensions: 44137
Number of successful extensions: 134
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)