Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_M09
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1412 + 26893221-26893613,26894205-26894587,26894697-268948...   174   8e-44
04_03_0791 + 19685720-19685914,19686436-19686459,19686823-196872...   165   3e-41
04_04_1628 + 34874688-34874915,34875182-34875232,34875532-348756...    31   1.0  
01_07_0016 - 40476014-40476333,40476598-40476740,40476945-404790...    31   1.0  
06_01_0610 - 4415080-4415461,4415872-4416851                           28   7.2  

>08_02_1412 + 26893221-26893613,26894205-26894587,26894697-26894814,
            26894998-26895192,26895318-26895542,26895773-26895832,
            26895956-26896036,26896142-26896547,26896730-26896965
          Length = 698

 Score =  174 bits (423), Expect = 8e-44
 Identities = 89/218 (40%), Positives = 132/218 (60%), Gaps = 5/218 (2%)
 Frame = -3

Query: 778  DSQAINDTLXTLDNAALEEMQKELDSNGE--YTLITXRGEFKLTPSLVNVKKTQKTIHVE 605
            + + + + L  +      +M+  L+S GE  + + T   +  +T  +V++   +K  H  
Sbjct: 476  NQKMVVEALEAMSEKEAMDMKAALESKGETNFQVCTLGKDVVITKKMVSISMEKKLEHQR 535

Query: 604  EIIPSVIEPSFGVGRILYCILEHNFRMREG---DEQRTYFSLPPTVAPMKCVVLPLSGNA 434
               PSVIEPSFG+GRI+YC+ EH+F  R     +EQ   F  PP VAP+KC V PL  N 
Sbjct: 536  VFTPSVIEPSFGIGRIIYCLFEHSFYTRPSKSEEEQLNVFRFPPIVAPIKCTVFPLVKNQ 595

Query: 433  EFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIKEPHTVTL 254
            EF    + + + L T  +SH +D ++ SIGRRYARTDE+GVP+AVTVD  T     +VT+
Sbjct: 596  EFDDAAKVIDKALTTAGISHIIDTTAISIGRRYARTDEIGVPFAVTVDSAT-----SVTI 650

Query: 253  RERDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYP 140
            RERDS  Q+R+ + +V +VV+ L++ +  W+DV  KYP
Sbjct: 651  RERDSKEQIRVGIDEVASVVKQLTDGQSTWADVSFKYP 688


>04_03_0791 + 19685720-19685914,19686436-19686459,19686823-19687205,
            19687282-19687379,19687622-19687800,19687912-19688136,
            19688619-19688678,19688816-19688896,19688983-19689388,
            19690035-19690285
          Length = 633

 Score =  165 bits (401), Expect = 3e-41
 Identities = 82/218 (37%), Positives = 131/218 (60%), Gaps = 5/218 (2%)
 Frame = -3

Query: 778  DSQAINDTLXTLDNAALEEMQKELDSNGE--YTLITXRGEFKLTPSLVNVKKTQKTIHVE 605
            + + + + L  +       M+  L+S GE  + + T   +  +  S+V++   +K  H  
Sbjct: 406  NQRMVLEALEAMSETEALNMKSALESKGEVEFKVCTLGKDVTIKKSMVSINMEKKKEHQR 465

Query: 604  EIIPSVIEPSFGVGRILYCILEHNFRMREG---DEQRTYFSLPPTVAPMKCVVLPLSGNA 434
            +  PSVIEPSFG+GRI+YC+ EH F  R G   DEQ   F  PP VAP+KC V PL    
Sbjct: 466  KFTPSVIEPSFGIGRIIYCLFEHCFYQRPGKAEDEQLNVFGFPPLVAPIKCTVFPLVKIE 525

Query: 433  EFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIKEPHTVTL 254
            +F+   + +S+ L    +SH +D +  +IG+RYARTDE+GVP A+TVD  T     +VT+
Sbjct: 526  KFEVVAKKISKALTAAGISHIIDMTGNTIGKRYARTDEIGVPLAITVDNTT-----SVTV 580

Query: 253  RERDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYP 140
            R+RDS  Q+R+ + +V +VV+++++ +  W+D+  +YP
Sbjct: 581  RDRDSKDQIRVEVDEVASVVKEVTDGQSTWADIMWRYP 618


>04_04_1628 +
           34874688-34874915,34875182-34875232,34875532-34875652,
           34875739-34875788,34876395-34876524,34877007-34877170,
           34877262-34877300,34877301-34877464,34877808-34877931,
           34878002-34878103,34878208-34878297
          Length = 420

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 14/59 (23%), Positives = 31/59 (52%)
 Frame = -3

Query: 739 NAALEEMQKELDSNGEYTLITXRGEFKLTPSLVNVKKTQKTIHVEEIIPSVIEPSFGVG 563
           +A  + +++ + S+ E +  T  G   +   ++NV++    +   E++ +   PSFGVG
Sbjct: 323 SACTKVLRQAVQSSSEMSHDTGAGLLLIQADVLNVRREVSALGAAELVAAYSSPSFGVG 381


>01_07_0016 -
           40476014-40476333,40476598-40476740,40476945-40479099,
           40479205-40480047,40480176-40480269,40480356-40481207,
           40481367-40481437,40481750-40481821,40481977-40482019
          Length = 1530

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = -3

Query: 247 RDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYPKFEQQETVKGTS 104
           R +M +  LP  DVP    +LS   +LWS++E  +PK      V G +
Sbjct: 692 RAAMGEANLPQHDVPRE-SELSPLGLLWSELEGMHPKQPLSSNVLGVN 738


>06_01_0610 - 4415080-4415461,4415872-4416851
          Length = 453

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 71  KSSCANLRQLHRCTFHSFLLFKLRIFLLNIRPQYFAIR 184
           +SS A  RQ+HRC   +  +F   +FL+ +   Y + R
Sbjct: 26  RSSAAMSRQVHRCFASTGTMFLWALFLVAMTATYLSFR 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,360,168
Number of Sequences: 37544
Number of extensions: 410815
Number of successful extensions: 1001
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)