Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_M09
(780 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna syn... 229 1e-60
U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna syn... 229 1e-60
U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan hyd... 31 0.70
AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan hy... 31 0.70
L14714-1|AAA28180.2| 244|Caenorhabditis elegans Temporarily ass... 29 3.7
Z50070-6|CAA90395.1| 548|Caenorhabditis elegans Hypothetical pr... 29 4.9
AL032628-3|CAA21554.2| 164|Caenorhabditis elegans Hypothetical ... 29 4.9
U88314-6|AAF99886.1| 240|Caenorhabditis elegans Hypothetical pr... 28 6.5
U50313-3|AAA92327.1| 335|Caenorhabditis elegans Cysteine protea... 28 6.5
L39926-1|AAA98783.1| 335|Caenorhabditis elegans cathepsin B-lik... 28 6.5
L39895-1|AAA98785.1| 335|Caenorhabditis elegans cathepsin B-lik... 28 6.5
AL032658-4|CAA21746.1| 283|Caenorhabditis elegans Hypothetical ... 28 6.5
Z75531-3|CAA99799.1| 172|Caenorhabditis elegans Hypothetical pr... 28 8.6
U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical pr... 28 8.6
AL110478-7|CAB54341.2| 343|Caenorhabditis elegans Hypothetical ... 28 8.6
>U23412-2|AAN65294.1| 678|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform b protein.
Length = 678
Score = 229 bits (561), Expect = 1e-60
Identities = 106/221 (47%), Positives = 153/221 (69%), Gaps = 1/221 (0%)
Frame = -3
Query: 778 DSQAINDTLXTLDNAALEEMQKELDSNGEYTLITXRGEFKLTPSLVNVKKTQKTIHVEEI 599
D++ I +L L + + +++EL + Y L + LTP +N+KK K IHV+EI
Sbjct: 457 DAKKIQTSLQQLTSEQVSALEEELLAKKLYNLSVDGQNYALTPEHLNIKKYTKKIHVQEI 516
Query: 598 IPSVIEPSFGVGRILYCILEHNFRMREGDEQRTYFSLPPTVAPMKCVVLPLSGNAEFQPF 419
PSVIEPS+G+GRI+Y +LEH+FR REGDEQRT+ + P VAP+KC VLP+S N P
Sbjct: 517 TPSVIEPSYGIGRIMYALLEHSFRQREGDEQRTFLAFKPLVAPIKCSVLPISANDTLIPV 576
Query: 418 VRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIK-EPHTVTLRERD 242
+ + +EL ++S+KVDDSSG+IGRRYARTDE+G+P+ +TVDFD++K P TVT+R +
Sbjct: 577 MDAVKEELSRFEMSYKVDDSSGTIGRRYARTDEIGIPFGITVDFDSLKTTPFTVTIRHAE 636
Query: 241 SMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYPKFEQQET 119
+M Q+RL ++++ ++ DL + WSD + KYPKFE T
Sbjct: 637 TMSQIRLEVSELGRLISDLVAGRQQWSDAQAKYPKFEASAT 677
>U23412-1|AAK21465.2| 742|Caenorhabditis elegans Glycyl trna
synthetase protein1, isoform a protein.
Length = 742
Score = 229 bits (561), Expect = 1e-60
Identities = 106/221 (47%), Positives = 153/221 (69%), Gaps = 1/221 (0%)
Frame = -3
Query: 778 DSQAINDTLXTLDNAALEEMQKELDSNGEYTLITXRGEFKLTPSLVNVKKTQKTIHVEEI 599
D++ I +L L + + +++EL + Y L + LTP +N+KK K IHV+EI
Sbjct: 521 DAKKIQTSLQQLTSEQVSALEEELLAKKLYNLSVDGQNYALTPEHLNIKKYTKKIHVQEI 580
Query: 598 IPSVIEPSFGVGRILYCILEHNFRMREGDEQRTYFSLPPTVAPMKCVVLPLSGNAEFQPF 419
PSVIEPS+G+GRI+Y +LEH+FR REGDEQRT+ + P VAP+KC VLP+S N P
Sbjct: 581 TPSVIEPSYGIGRIMYALLEHSFRQREGDEQRTFLAFKPLVAPIKCSVLPISANDTLIPV 640
Query: 418 VRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIK-EPHTVTLRERD 242
+ + +EL ++S+KVDDSSG+IGRRYARTDE+G+P+ +TVDFD++K P TVT+R +
Sbjct: 641 MDAVKEELSRFEMSYKVDDSSGTIGRRYARTDEIGIPFGITVDFDSLKTTPFTVTIRHAE 700
Query: 241 SMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYPKFEQQET 119
+M Q+RL ++++ ++ DL + WSD + KYPKFE T
Sbjct: 701 TMSQIRLEVSELGRLISDLVAGRQQWSDAQAKYPKFEASAT 741
>U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan
hydroxylase protein1, isoform a protein.
Length = 532
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -3
Query: 433 EFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIKEPHTVTL 254
+FQ + + + + ++ VS D+ RR+ R+ LG+P+ D + P T T+
Sbjct: 12 KFQYYSKKAAGKTMSNSVSMSSDNRMEDFKRRFRRSGSLGIPFVPEEDVKQLFTP-TRTV 70
Query: 253 RERDSMRQ 230
R S+R+
Sbjct: 71 RREASIRE 78
>AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan
hydroxylase protein.
Length = 532
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -3
Query: 433 EFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIKEPHTVTL 254
+FQ + + + + ++ VS D+ RR+ R+ LG+P+ D + P T T+
Sbjct: 12 KFQYYSKKAAGKTMSNSVSMSSDNRMEDFKRRFRRSGSLGIPFVPEEDVKQLFTP-TRTV 70
Query: 253 RERDSMRQ 230
R S+R+
Sbjct: 71 RREASIRE 78
>L14714-1|AAA28180.2| 244|Caenorhabditis elegans Temporarily
assigned gene nameprotein 354, isoform a protein.
Length = 244
Score = 29.1 bits (62), Expect = 3.7
Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 4/100 (4%)
Frame = -3
Query: 424 PFV--RDLSQELITVDVSHKVDDSSGSIGRRYAR--TDELGVPYAVTVDFDTIKEPHTVT 257
PFV R + +EL D K D G + R + +LG +T D T E +
Sbjct: 146 PFVKRRKILEELSDKDWDTKTMDEVGEQADKVFRALSAQLGSQKYLTGDLPT--EADALL 203
Query: 256 LRERDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYPK 137
++ VRLP+ ++ +++ SN +EQ+Y K
Sbjct: 204 FGHMYTLITVRLPLTNITNILKKYSNLIEFTKRIEQQYFK 243
>Z50070-6|CAA90395.1| 548|Caenorhabditis elegans Hypothetical
protein F43G6.6 protein.
Length = 548
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 217 MADVPTVVRDLSNSKILWSDVEQK 146
MA P V+D+S +K LWSDV K
Sbjct: 232 MARPPRFVQDISMAKRLWSDVTSK 255
>AL032628-3|CAA21554.2| 164|Caenorhabditis elegans Hypothetical
protein Y38H6A.2 protein.
Length = 164
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 90 CVSYTDVPFTVSCCSNLGYFCSTSDHNILLLDKSLTTVGTSAMGNLTCLILSLSLRVTVW 269
C +Y V T NLGY C ++I ++DK +G+ G+ +IL ++ V+
Sbjct: 40 CQTYRIVE-TCDTIPNLGYICCCVHYSITIIDKQ---IGSRHEGSFFAVILIQIFQIFVF 95
Query: 270 --GSLIVSKSTVT 302
+L +K+ VT
Sbjct: 96 FKNTLDAAKNQVT 108
>U88314-6|AAF99886.1| 240|Caenorhabditis elegans Hypothetical
protein C46H11.7 protein.
Length = 240
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/67 (28%), Positives = 26/67 (38%)
Frame = +3
Query: 21 RTSSQSIQSMXHHAQSPKAAVQTCVSYTDVPFTVSCCSNLGYFCSTSDHNILLLDKSLTT 200
RT + S + S A TCV + VS C N FC+ S + L+ + T
Sbjct: 174 RTCGRCNSSSTVTSSSSTTASTTCVDQVNAATGVSDCPNRRAFCTNSAYATLMRAQCPLT 233
Query: 201 VGTSAMG 221
G G
Sbjct: 234 CGFCTSG 240
>U50313-3|AAA92327.1| 335|Caenorhabditis elegans Cysteine protease
related protein 4 protein.
Length = 335
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 78 AVQTCVSYTDVPFTVSCCSNLGYFC 152
AV T +S DV +SCCSN GY C
Sbjct: 129 AVNTLLSAEDV---LSCCSNCGYGC 150
>L39926-1|AAA98783.1| 335|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 335
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 78 AVQTCVSYTDVPFTVSCCSNLGYFC 152
AV T +S DV +SCCSN GY C
Sbjct: 129 AVNTLLSAEDV---LSCCSNCGYGC 150
>L39895-1|AAA98785.1| 335|Caenorhabditis elegans cathepsin B-like
cysteine proteinaseprotein.
Length = 335
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 78 AVQTCVSYTDVPFTVSCCSNLGYFC 152
AV T +S DV +SCCSN GY C
Sbjct: 129 AVNTLLSAEDV---LSCCSNCGYGC 150
>AL032658-4|CAA21746.1| 283|Caenorhabditis elegans Hypothetical
protein Y76A2B.5 protein.
Length = 283
Score = 28.3 bits (60), Expect = 6.5
Identities = 27/120 (22%), Positives = 53/120 (44%)
Frame = -3
Query: 448 LSGNAEFQPFVRDLSQELITVDVSHKVDDSSGSIGRRYARTDELGVPYAVTVDFDTIKEP 269
L N PF D+S + + +V++S I R T+ + + + +
Sbjct: 45 LGPNDSQYPFQGDVSFAHKPLSIRQQVENSK--IERVMDDTEHNLINLLSNTNIE-VDRT 101
Query: 268 HTVTLRERDSMRQVRLPMADVPTVVRDLSNSKILWSDVEQKYPKFEQQETVKGTSV*LTQ 89
H L+E ++M +++ ADV + + K+L +++ +P+ E Q+ T LTQ
Sbjct: 102 HLAQLKE-EAMEEIQANAADVEIELSAIEAPKLLKKEMKYLFPQMETQKMNNVTVFNLTQ 160
>Z75531-3|CAA99799.1| 172|Caenorhabditis elegans Hypothetical
protein C54D10.3 protein.
Length = 172
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +3
Query: 75 AAVQTCVSYTDVPFTVSCCSNLGYFCSTSDHNILLLDKSLTTVGTSAMGN 224
A+ TCV + VS C Y C+ S + L+ ++ T + GN
Sbjct: 68 ASTSTCVDKVNPSTGVSDCPKSAYLCNDSTYYTLMTEQCPKTCNRCSGGN 117
>U39999-8|AAY44011.1| 146|Caenorhabditis elegans Hypothetical
protein F41G3.19 protein.
Length = 146
Score = 27.9 bits (59), Expect = 8.6
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +3
Query: 66 SPKAAVQTCVSYTDVPFTVSCCSNLGYFCSTSDHNILLLDKSLTTVGTSAMG 221
S ++ TCV T+ VS C+ + +C+ S + L+ + T G G
Sbjct: 95 STTSSSSTCVDLTNASTGVSDCTRMASYCTNSIYLTLMKQQCPKTCGYCTSG 146
>AL110478-7|CAB54341.2| 343|Caenorhabditis elegans Hypothetical
protein Y26D4A.4 protein.
Length = 343
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/111 (19%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Frame = +2
Query: 14 NRSHKLTIN-PINGASCSISKSSCANLRQLHRCTFHSFLLFKLRIFL-LNIRPQYFAIR* 187
+ H++ I P++ SCS++ L + + F RI++ + P+Y+AI
Sbjct: 67 SEGHRIAIKIPLSKRSCSLTTEQL--LHNQYYMYYPYVFTFMKRIYIGIRTSPKYYAITS 124
Query: 188 IPYNCGNICHGQSYLPHTIPFSKGDCVGFFNCIKIDSHGIRHSQFISSGIT 340
+ ++Y+P+ + K + D+ + +S ++ GIT
Sbjct: 125 FKDDL------ETYMPYDLSCPKSQLTSWAERRATDNSSVCYSHIVAPGIT 169
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,377
Number of Sequences: 27780
Number of extensions: 387039
Number of successful extensions: 1127
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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