Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_M08
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    25   7.9  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   7.9  
SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces po...    25   7.9  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 341 RLVAFTFHPTDPFAISVQRTNSEYIVNFHIRNAVFS 234
           R+ A  FHPT+P+ I+        I N++ +  V S
Sbjct: 16  RVKAVDFHPTEPWVIASHYNGQVGIWNYNTQTLVRS 51


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 298  IAKGSVGWNVKATSLRALGGTDCPKTPAYILNFN 399
            +AKG+VGWN   +S+ +  G   P+   Y  N++
Sbjct: 1910 VAKGAVGWNQTNSSIGS--GIIQPRDTNYTANYS 1941


>SPAC12B10.16c |mug157||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 509

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 291 YANSKRICWMECESY*SSSTGRHRLS*NPCIYFKFQ*PRIPC 416
           +AN+  I W  C +Y + S  RH  +  P +   FQ P   C
Sbjct: 16  FANNLNIPWKACPNYKTYSGRRHYPATGP-LRLPFQRPATSC 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,615
Number of Sequences: 5004
Number of extensions: 51667
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)