Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_M05
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    55   8e-09
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    35   0.012
SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyce...    27   1.9  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   3.3  
SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta su...    26   5.7  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    26   5.7  

>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 55.2 bits (127), Expect = 8e-09
 Identities = 26/70 (37%), Positives = 42/70 (60%)
 Frame = -1

Query: 664 LFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGD 485
           LFIG  IF  EGI ++LP++  MAKP++    P +L   M+ + LL++ +G L Y  +G 
Sbjct: 459 LFIGVAIFTYEGICLILPIQEQMAKPKNL---PKLLTGVMAAISLLFISIGLLSYAAFGS 515

Query: 484 QAMGSITLNL 455
           +    + LN+
Sbjct: 516 KVKTVVILNM 525


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 34.7 bits (76), Expect = 0.012
 Identities = 34/146 (23%), Positives = 55/146 (37%), Gaps = 5/146 (3%)
 Frame = -1

Query: 565 GVLNLTMSVVV----LLYMIMGFLGYVKYGDQAMGSITLNLDTGEXXXXXXXXXXXXXXX 398
           G +N TM   +    LLY+++   GY+ +G  A G+I    D                  
Sbjct: 235 GFVNFTMFTAIISSTLLYLLVAITGYLSFGSLASGNIIAMYDNTSIWIIGGKLAIVVLVL 294

Query: 397 FTYTLQFYVPMEIVWRN-TKDHVAQKYHNITEAVMRXXXXXXXXXXXXXLPSLEQVIGLE 221
           F+Y LQ +     V++   + + A    +   AV+              L SLE V+   
Sbjct: 295 FSYPLQCHPCRNSVYQAIRRSYSAHDMSDGYHAVITLCILLFTHSLALLLSSLEMVLAFV 354

Query: 220 GAFFYSFLGLIAPSILDLIFKWEXRS 143
           G+   +F+  I P  L   F  +  S
Sbjct: 355 GSTGSTFISFILPGSLYYFFSHKVAS 380


>SPBC20F10.08c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 747

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 420 IFAIRAGISPVSKFRVILPIAWSPYLTYPR 509
           I ++   ISP   F  ILP  WS + T PR
Sbjct: 235 ISSVPKDISPQKYFSCILPQVWSLFSTQPR 264


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -2

Query: 264 RQRRYQVLNKL*A*KELSSTPSLVS*PRPYWISFSSGXRGLGRNNWIL 121
           R  +  +LN+L A        SLVS P P  +S SS  + + +NN IL
Sbjct: 316 RDNKGLILNELWAFNYSQQRWSLVSNPIPILLSDSSSYKIVSKNNHIL 363


>SPBC30D10.13c |pdb1||pyruvate dehydrogenase e1 component beta
           subunit Pdb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 366

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 110 KSLNKIQLFLPRPRFPLENEIQYGRGYE-TKEGVEESSF*AYNLFK 244
           + L K  +  P P   LENEI YG+ +  +KE + E     + L K
Sbjct: 189 RGLLKAAIRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAK 234


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = +3

Query: 597 IVFSTGSTTPIPSIAKI 647
           +VFST STTP+P+++ +
Sbjct: 452 LVFSTTSTTPLPALSHL 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,683,858
Number of Sequences: 5004
Number of extensions: 54270
Number of successful extensions: 111
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)