Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_M05
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0264 + 27263562-27264830 57 1e-08
04_04_0819 - 28312667-28313219,28315157-28316430 56 3e-08
07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907 48 9e-06
03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434 42 4e-04
01_05_0509 + 22811184-22812038,22813493-22814020 40 0.002
01_05_0586 + 23443371-23444645 39 0.004
01_05_0584 + 23435620-23436408,23436966-23437508 39 0.004
04_04_0126 + 22952577-22952871,22952912-22953519,22954125-229545... 36 0.022
06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478 36 0.029
04_01_0524 - 6877156-6877175,6877254-6877281,6877394-6877529,687... 36 0.039
01_05_0507 - 22800124-22800163,22800411-22800554,22801291-228018... 34 0.090
05_04_0029 - 17321378-17321905,17323348-17323525,17323531-173239... 33 0.21
02_05_1018 - 33530834-33530926,33531036-33531098,33531193-335312... 33 0.21
02_05_0565 + 30010395-30010485,30011604-30011678,30011913-300121... 33 0.21
01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077 33 0.21
07_01_0248 - 1821340-1821996,1823619-1823761,1824239-1824453,182... 32 0.36
02_01_0018 + 119890-120238,120331-120424,120518-121529 32 0.36
11_03_0157 + 10897769-10898066,10898308-10899461 32 0.48
01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708 32 0.48
12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551 31 0.63
12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660 31 0.63
01_06_1400 - 37036957-37037705,37037809-37037995,37038108-370382... 31 0.63
01_04_0009 + 15052324-15052439,15052544-15052844 31 0.84
06_03_0442 + 20837492-20837621,20841842-20842075,20842435-208425... 31 1.1
01_06_1194 - 35313132-35313154,35314462-35314604,35314751-353154... 30 1.5
04_04_0125 + 22944505-22944556,22944665-22945363,22946445-22946947 29 3.4
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 28 5.9
06_01_1136 + 9407282-9407663,9408075-9408227,9408336-9408539,940... 28 7.8
>02_05_0264 + 27263562-27264830
Length = 422
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/71 (39%), Positives = 41/71 (57%)
Frame = -1
Query: 658 IGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGDQA 479
IG ++A EGIG+VLP+E A + F L L+M + ++Y + G +GY+ +GD
Sbjct: 227 IGVSVYAFEGIGMVLPLEAEAANKKKFGT---TLGLSMGFIAVMYGLFGAMGYIAFGDAT 283
Query: 478 MGSITLNLDTG 446
IT NL TG
Sbjct: 284 RDIITTNLGTG 294
>04_04_0819 - 28312667-28313219,28315157-28316430
Length = 608
Score = 55.6 bits (128), Expect = 3e-08
Identities = 27/71 (38%), Positives = 42/71 (59%)
Frame = -1
Query: 658 IGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGDQA 479
+G ++A EGIG+VLP+E A + F G L L+M+ + ++Y + G +GY+ +G
Sbjct: 230 LGVAVYAFEGIGMVLPLEAEAADKRKFG---GTLALSMAFIAVMYGLFGAMGYLAFGAAT 286
Query: 478 MGSITLNLDTG 446
IT NL TG
Sbjct: 287 RDIITTNLGTG 297
>07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907
Length = 424
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/72 (31%), Positives = 39/72 (54%)
Frame = -1
Query: 670 LPLFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKY 491
+P G +F EG + L +E++MA+ + F VL+ + ++++Y G GY+ Y
Sbjct: 216 IPFTFGVAVFCFEGFSMTLALESSMAERRKFRW---VLSQAVVGIIIVYACFGVCGYLAY 272
Query: 490 GDQAMGSITLNL 455
G+ ITLNL
Sbjct: 273 GEATKDIITLNL 284
>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
Length = 418
Score = 41.9 bits (94), Expect = 4e-04
Identities = 23/72 (31%), Positives = 38/72 (52%)
Frame = -1
Query: 670 LPLFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKY 491
+P G +F EG + L +E +M+ + F P +L+ ++ V +Y+ G GY+ Y
Sbjct: 217 VPFACGVAVFCFEGFCLTLALEASMSDRRRFR--PVLLH-AIAGVTAVYVCFGVCGYLAY 273
Query: 490 GDQAMGSITLNL 455
GD +TLNL
Sbjct: 274 GDVTRDIVTLNL 285
>01_05_0509 + 22811184-22812038,22813493-22814020
Length = 460
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = -1
Query: 670 LPLFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKY 491
LP + G GV V ++M + F P VL +++ + L Y + LGY+ Y
Sbjct: 253 LPTALSLYFVCFAGHGVFPTVYSSMNSKKDF---PKVLLISLVLCSLNYAVTAVLGYLIY 309
Query: 490 GDQAMGSITLNLDTGE 443
G+ +TL+L TG+
Sbjct: 310 GEDVQAQVTLSLPTGK 325
>01_05_0586 + 23443371-23444645
Length = 424
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = -1
Query: 670 LPLFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKY 491
+P +G G V + ++M +HF VL ++ + L Y + LGY+ Y
Sbjct: 221 IPTSLGLYFVCFTGHAVFPTIYSSMKNSKHFSK---VLLISSVLCSLNYGLTAVLGYMIY 277
Query: 490 GDQAMGSITLNLDTGE 443
GD +TLNL +G+
Sbjct: 278 GDDVQSQVTLNLPSGK 293
>01_05_0584 + 23435620-23436408,23436966-23437508
Length = 443
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/76 (31%), Positives = 35/76 (46%)
Frame = -1
Query: 670 LPLFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKY 491
LP + G GV V ++M + F P VL ++ + L Y + LGY Y
Sbjct: 231 LPTALSLYFVCFAGHGVFPTVYSSMRARKDF---PKVLLISSVLCSLNYAVTAVLGYKIY 287
Query: 490 GDQAMGSITLNLDTGE 443
G+ +TLNL TG+
Sbjct: 288 GEDVQAQVTLNLPTGK 303
>04_04_0126 +
22952577-22952871,22952912-22953519,22954125-22954596,
22954882-22954955,22955559-22955937,22956659-22956711
Length = 626
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/76 (30%), Positives = 33/76 (43%)
Frame = -1
Query: 670 LPLFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKY 491
LP +G F G + + N+M + F VL + + Y M LGY+ Y
Sbjct: 269 LPTALGLYTFCYCGHAIFPTLCNSMQEKDKFSR---VLVICFVACTVNYGSMAILGYLMY 325
Query: 490 GDQAMGSITLNLDTGE 443
GD +TLNL G+
Sbjct: 326 GDDVKSQVTLNLPEGK 341
>06_01_0872 + 6687849-6687864,6689622-6690235,6690927-6691478
Length = 393
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/72 (29%), Positives = 31/72 (43%)
Frame = -1
Query: 670 LPLFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKY 491
+P + F G V + M + F P VL + + L Y +MG +GY+ Y
Sbjct: 178 VPTAMSLYAFCFSGHAVFPMIYTGMRNRRMF---PHVLLICFIICTLAYGVMGVIGYLMY 234
Query: 490 GDQAMGSITLNL 455
G +TLNL
Sbjct: 235 GGSLRSQVTLNL 246
>04_01_0524 -
6877156-6877175,6877254-6877281,6877394-6877529,
6877619-6877875
Length = 146
Score = 35.5 bits (78), Expect = 0.039
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -1
Query: 670 LPLFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKY 491
+P+ +G + G GV + ++M K F P V+ +++ +L+ +GY+ +
Sbjct: 49 IPIAVGLYGYCYSGHGVFPNIYSSMKKRSQF---PAVIFTCIALSTVLFAGAAIMGYIMF 105
Query: 490 GDQAMGSITLNL 455
G+ TLNL
Sbjct: 106 GESTESQFTLNL 117
>01_05_0507 -
22800124-22800163,22800411-22800554,22801291-22801850,
22803207-22803264,22803885-22804124,22804191-22804315
Length = 388
Score = 34.3 bits (75), Expect = 0.090
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = -1
Query: 643 FAMEGIGVVLPVENTMAKPQH-FXGCPGVLNLTMSVVVLLYM-IMGFLGYVKYGDQAMGS 470
+ + IG+++ + N K PG++ L SV+ L + LGY+ YG+
Sbjct: 113 YGLTAIGLIIIMVNENLKVNGGIKLAPGLVLLISSVMCSLNSTVTTVLGYLSYGEDVQVK 172
Query: 469 ITLNLDTGE 443
+TLNL TG+
Sbjct: 173 VTLNLPTGK 181
>05_04_0029 -
17321378-17321905,17323348-17323525,17323531-17323910,
17323936-17324052
Length = 400
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/76 (28%), Positives = 34/76 (44%)
Frame = -1
Query: 670 LPLFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKY 491
LP + G GV V ++M + F P VL ++ + L Y + L Y+ Y
Sbjct: 193 LPTALTLYFVCFAGHGVFPTVYSSMKSKKDF---PKVLLISSVLCSLNYAVTVVLRYLIY 249
Query: 490 GDQAMGSITLNLDTGE 443
G+ +T NL TG+
Sbjct: 250 GEDVQSQVTQNLPTGK 265
>02_05_1018 -
33530834-33530926,33531036-33531098,33531193-33531236,
33531973-33532118,33532262-33532281,33532365-33532500,
33532585-33532804,33532905-33533085,33533495-33533518,
33534127-33534341,33534425-33534705,33535987-33536210
Length = 548
Score = 33.1 bits (72), Expect = 0.21
Identities = 19/72 (26%), Positives = 32/72 (44%)
Frame = -1
Query: 670 LPLFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKY 491
+P IG F G V + +M+ F L + ++ +Y +GY+ +
Sbjct: 345 IPFAIGIYGFCYSGHSVFPNIYQSMSDRTKFTKA---LFICFAICTAIYGSFAIIGYLMF 401
Query: 490 GDQAMGSITLNL 455
GD+ + ITLNL
Sbjct: 402 GDKTLSQITLNL 413
>02_05_0565 +
30010395-30010485,30011604-30011678,30011913-30012138,
30014432-30014649,30015170-30015303,30015424-30015675,
30016009-30016416
Length = 467
Score = 33.1 bits (72), Expect = 0.21
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 658 IGTVIFAMEGIGVVLPVENTM-AKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGDQ 482
IG + FA V+L +E+T+ + P +++V Y+ G GY +GD
Sbjct: 231 IGDIAFAYPFASVLLEIEDTLRSPPPESETMRTASRASIAVTTFFYLCCGCFGYAAFGDA 290
Query: 481 AMGSI 467
G++
Sbjct: 291 TPGNL 295
>01_05_0504 + 22781737-22781799,22782033-22782287,22783652-22784077
Length = 247
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -1
Query: 631 GIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGDQAMGSITLNLD 452
G GV V + M + F P VL ++ + L Y + L Y+ YG+ +TLNL
Sbjct: 87 GHGVFPTVHSLMKSKKDF---PKVLLISSVLCSLNYAVTTLLRYLIYGEDVQAQVTLNLP 143
Query: 451 TGE 443
+G+
Sbjct: 144 SGK 146
>07_01_0248 -
1821340-1821996,1823619-1823761,1824239-1824453,
1825911-1826049,1826152-1826385,1826504-1826624
Length = 502
Score = 32.3 bits (70), Expect = 0.36
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = -1
Query: 658 IGTVIFAMEGIGVVLPVENTM-AKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGDQ 482
+G + FA V++ +++T+ + P + +S YM+ G LGY +G++
Sbjct: 267 LGDIAFAYSYSNVLIEIQDTLRSSPAENEVMKKASFIGVSTTTTFYMLCGVLGYAAFGNR 326
Query: 481 AMGS 470
A G+
Sbjct: 327 APGN 330
>02_01_0018 + 119890-120238,120331-120424,120518-121529
Length = 484
Score = 32.3 bits (70), Expect = 0.36
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -1
Query: 658 IGTVIFAMEGIGVVLPVENTM-AKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGDQ 482
+G + FA +++ +++T+ + P +++ V + Y++ G +GY +GD
Sbjct: 256 LGDIAFAYSYSIILIEIQDTLRSPPAEARTMRKATGISVVVTSVFYLLCGCMGYAAFGDD 315
Query: 481 AMGSI 467
A G++
Sbjct: 316 APGNL 320
>11_03_0157 + 10897769-10898066,10898308-10899461
Length = 483
Score = 31.9 bits (69), Expect = 0.48
Identities = 34/173 (19%), Positives = 60/173 (34%), Gaps = 1/173 (0%)
Frame = -1
Query: 670 LPLFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKY 491
+P G +F+ G V + M P F V + +VV LY + F+G +
Sbjct: 272 IPAVSGLYMFSYAGHIVFPNIHAAMKDPSAFTR---VSVASFAVVTALYTALAFVGASMF 328
Query: 490 GDQAMGSITLNLDTGEXXXXXXXXXXXXXXXFTYTLQFYVPMEI-VWRNTKDHVAQKYHN 314
G ITL++ G Y L+F P I + R+ ++ +
Sbjct: 329 GPSVSSQITLSMPPGLAVTRIALWATVLTPVTKYALEF-APFAIQLERHLPAAMSPRART 387
Query: 313 ITEAVMRXXXXXXXXXXXXXLPSLEQVIGLEGAFFYSFLGLIAPSILDLIFKW 155
+ + +P + V+ L G+ + +I P L +W
Sbjct: 388 LVRGGVGSAALLLILALALSVPYFQYVLSLTGSLVSVAISIIFPCAFYLKIRW 440
>01_06_1569 - 38304077-38304873,38304956-38305498,38305582-38305708
Length = 488
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = -1
Query: 655 GTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVV--LLYMIMGFLGYVKYGDQ 482
G + FA +++ +++T+ P +SV V + YM+ G +GY +GD
Sbjct: 254 GDIAFAYSYSLILIEIQDTIRAPPPSESAVMKRATVVSVAVTTVFYMLCGSMGYAAFGDD 313
Query: 481 AMGSI 467
A G++
Sbjct: 314 APGNL 318
>12_01_0522 - 4143921-4144556,4144656-4144798,4144903-4145551
Length = 475
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 655 GTVIFAMEGIGVVLPVENTMAKPQHFXG--CPGVLNLTMSVVVLLYMIMGFLGYVKYGDQ 482
G + FA +++ +++T+ P L+++ + YM+ G +GY +GD
Sbjct: 248 GDIAFAYSFSNILIEIQDTIKAPPPSEAKVMKSATRLSVATTTVFYMLCGCMGYAAFGDA 307
Query: 481 A 479
A
Sbjct: 308 A 308
>12_01_0520 + 4120030-4120678,4120783-4120925,4121025-4121660
Length = 475
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = -1
Query: 655 GTVIFAMEGIGVVLPVENTMAKPQHFXG--CPGVLNLTMSVVVLLYMIMGFLGYVKYGDQ 482
G + FA +++ +++T+ P L+++ + YM+ G +GY +GD
Sbjct: 248 GDIAFAYSFSNILIEIQDTIKAPPPSEAKVMKSATRLSVATTTVFYMLCGCMGYAAFGDA 307
Query: 481 A 479
A
Sbjct: 308 A 308
>01_06_1400 -
37036957-37037705,37037809-37037995,37038108-37038205,
37039562-37039655
Length = 375
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -1
Query: 649 VIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGDQAMGS 470
VI G G++ ++ T+A P G L L +VVV + + GY +G+Q+ G+
Sbjct: 157 VIATTYGNGIIPEIQATVAAPVTGKMFKG-LCLCYAVVVTTFFSVAISGYWAFGNQSQGT 215
Query: 469 ITLNLDTG 446
+ N G
Sbjct: 216 LLSNFMVG 223
>01_04_0009 + 15052324-15052439,15052544-15052844
Length = 138
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 552 KFSTPGQPXKC*GLAIVFSTGSTTPIPSIAKITVPMNNGK 671
+ STPG G A+ ++ + +P PS+A +T P N K
Sbjct: 42 EMSTPGTSSSPAGGAVAVTSPTPSPSPSLAPVTTPNTNSK 81
>06_03_0442 +
20837492-20837621,20841842-20842075,20842435-20842528,
20842653-20842870,20842956-20843095,20843231-20843878
Length = 487
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 658 IGTVIFAMEGIGVVLPVENTM-AKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGDQ 482
+G + FA +++ +++T+ + P L +S YM+ G LGY +G+
Sbjct: 255 LGDIAFAYSYSMILIEIQDTVKSPPAENKTMKKATLLGVSTTTAFYMLCGCLGYAAFGNA 314
Query: 481 AMGSI 467
A G++
Sbjct: 315 APGNM 319
>01_06_1194 -
35313132-35313154,35314462-35314604,35314751-35315444,
35315746-35315895,35316011-35316419
Length = 472
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/71 (22%), Positives = 33/71 (46%)
Frame = -1
Query: 664 LFIGTVIFAMEGIGVVLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGD 485
LF+ T + A+ V P+ ++K + +++ + +Y +GF G++ +GD
Sbjct: 268 LFLETELSALHL--AVHPIRTELSKTSDMKAA---VRISLVLCAAIYAAVGFFGFLLFGD 322
Query: 484 QAMGSITLNLD 452
M + N D
Sbjct: 323 ATMADVLANFD 333
>04_04_0125 + 22944505-22944556,22944665-22945363,22946445-22946947
Length = 417
Score = 29.1 bits (62), Expect = 3.4
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -1
Query: 517 MGFLGYVKYGDQAMGSITLNL 455
M LGY+ YGD + +TLNL
Sbjct: 259 MAVLGYLMYGDGVLSQVTLNL 279
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 248 KS*TSYRPRRSFLLLLPWS 192
KS TSYRP+ F+ LL W+
Sbjct: 863 KSNTSYRPKEDFVYLLDWA 881
>06_01_1136 +
9407282-9407663,9408075-9408227,9408336-9408539,
9408709-9409174,9409434-9409575
Length = 448
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/57 (19%), Positives = 27/57 (47%)
Frame = -1
Query: 619 VLPVENTMAKPQHFXGCPGVLNLTMSVVVLLYMIMGFLGYVKYGDQAMGSITLNLDT 449
V P+ N + P +++ ++ + +Y+ F GY+ +G+ + + N D+
Sbjct: 247 VHPIHNELKDPSQIKP---IVHTSLVLCSTVYITTSFFGYLLFGESTLSDVLANFDS 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,174,582
Number of Sequences: 37544
Number of extensions: 345763
Number of successful extensions: 718
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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