Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_M04
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1171 + 34672997-34673122,34673500-34673595,34674126-346742...    30   1.8  
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726...    30   1.8  

>02_05_1171 +
           34672997-34673122,34673500-34673595,34674126-34674229,
           34674303-34674502,34674643-34674765,34674910-34674998,
           34675579-34675642,34675906-34676049,34676173-34676270,
           34676479-34676724,34676826-34676909,34677011-34677022
          Length = 461

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 335 RPDSRLQHFQDKPAITISPARWKM 264
           R D+    F+ +P +T+SP RWK+
Sbjct: 31  REDAAKTRFKPRPGLTLSPRRWKL 54


>02_04_0236 -
           21170753-21170794,21171089-21172220,21172332-21172601,
           21173043-21173305,21173406-21173492,21174149-21174326,
           21174784-21174984,21175769-21176025
          Length = 809

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 405 NRGVLRDIYSADKELLLHMCTIFLFYTSVRRSCGIYTVNV 524
           N   +R+++S   E   HM T+F+F+T+V    GI T  V
Sbjct: 490 NDDAIRNLFSNGTESEFHMSTLFIFFTAV-YCLGILTYGV 528


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,924,588
Number of Sequences: 37544
Number of extensions: 307242
Number of successful extensions: 481
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)