Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_M04
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical...    29   2.1  
AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.      29   2.1  
U50312-2|AAA92319.2|  477|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AC006830-8|ABA00186.1|  289|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AL033514-22|CAA22106.3| 1353|Caenorhabditis elegans Hypothetical
           protein Y75B8A.22 protein.
          Length = 1353

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/66 (28%), Positives = 37/66 (56%)
 Frame = +2

Query: 158 YSPI*LVHRYVHIDKKESNMYVSNRISMECLTMKGTSSTELVILLLQAYLENVVSENQVF 337
           Y+ + L+HRY++   KE N     + ++E + +      EL I +++ +  +V+S N  F
Sbjct: 440 YNELVLLHRYIYEHAKEENERKFAKRALEHI-VNVEEYRELPIFIIKKFSSSVLSNN--F 496

Query: 338 VKYLVL 355
           ++ LVL
Sbjct: 497 LRELVL 502


>AF183401-1|AAF13189.1| 1353|Caenorhabditis elegans TIM-1 protein.
          Length = 1353

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/66 (28%), Positives = 37/66 (56%)
 Frame = +2

Query: 158 YSPI*LVHRYVHIDKKESNMYVSNRISMECLTMKGTSSTELVILLLQAYLENVVSENQVF 337
           Y+ + L+HRY++   KE N     + ++E + +      EL I +++ +  +V+S N  F
Sbjct: 440 YNELVLLHRYIYEHAKEENERKFAKRALEHI-VNVEEYRELPIFIIKKFSSSVLSNN--F 496

Query: 338 VKYLVL 355
           ++ LVL
Sbjct: 497 LRELVL 502


>U50312-2|AAA92319.2|  477|Caenorhabditis elegans Hypothetical
           protein B0222.2 protein.
          Length = 477

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 500 VWYLHSQRRIDGVRVTARFPTILELFCPCSLG 595
           VW L  + R+DG  +T  F TI ++F  C  G
Sbjct: 297 VWLLPDRTRVDGRNITKLFSTI-QVFTACFAG 327


>AC006830-8|ABA00186.1|  289|Caenorhabditis elegans Hypothetical
           protein ZK105.8 protein.
          Length = 289

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +2

Query: 449 FTAHVYYILILYFR*KVVWYLHSQRRIDGVR-----VTARFPTILELF 577
           FT  +Y  LILYF  ++++ LH  R+    +     ++A F  + +LF
Sbjct: 180 FTFVLYCSLILYFYFQILYMLHGHRKFMAAKTYSKHISAMFSLVAQLF 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,224,521
Number of Sequences: 27780
Number of extensions: 289533
Number of successful extensions: 474
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)