Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_L24
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    28   1.4  
SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    27   2.4  
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb...    27   2.4  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   3.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   4.3  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    25   7.5  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
 Frame = +1

Query: 70  VSCLHFVIVDFTIIFF----LNKLYHLPYRS 150
           V+ +HF+   FT I+F    LN L+H  Y+S
Sbjct: 600 VAIVHFIFSVFTFIYFSLVPLNNLFHRAYKS 630


>SPAC1565.07c |||TATA binding protein interacting protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 46  ASRKCKNYVSCLHFVIVDFTIIFFLNKLY 132
           A +K KNY+S L  ++ +  +  F+NK Y
Sbjct: 94  AGKKSKNYLSALSLLLSNSNVQPFVNKFY 122


>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/67 (29%), Positives = 33/67 (49%)
 Frame = +1

Query: 88  VIVDFTIIFFLNKLYHLPYRSLLF*YDIFLYETK*TVKINIQL*IASIKFVNSKTKLFYY 267
           +++DF  I FLNK Y   + +L      F  + K +  I I   ++ +K   +K  LF+ 
Sbjct: 430 LLMDFVAILFLNKEYTKAFATL---EKTFASKIKPSHNI-ISFSLSLVKRFGTKNDLFFL 485

Query: 268 RNFNKNL 288
           R   KN+
Sbjct: 486 RRSFKNM 492


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 236 NLILAIYN*IFIFTVHLVSYKNISY*NKSERYGRWYNLF 120
           NL++A+Y  + + TV+   Y N+       R  RW   F
Sbjct: 509 NLVIALYRPVILDTVNRRDYTNVYNSFHDRRVWRWSTFF 547


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 257  CFTIEILIKIYLVFFFYHY 313
            C+TI I +K+Y + F+Y +
Sbjct: 1310 CYTINICVKVYGLSFYYFF 1328


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 128 CTTYHTAHFYFNMIYFYTK 184
           C  Y T H   NMI +YTK
Sbjct: 540 CPLYKTYHMMRNMIAYYTK 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,307,371
Number of Sequences: 5004
Number of extensions: 41926
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)