Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_L24
         (669 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14331-8|AAA28100.1|  586|Caenorhabditis elegans C.elegans homeo...    29   2.3  
U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein...    29   3.0  
AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical ...    28   6.9  

>L14331-8|AAA28100.1|  586|Caenorhabditis elegans C.elegans homeobox
           protein 26 protein.
          Length = 586

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 244 SKTKLFYYRNFNKNLLGVFFLSLCFNVFNSSTLSMC*VSFEQFFF 378
           +K   FY R  N NLL  +F  + FN  N++ L     +F +F++
Sbjct: 438 AKLMFFYTRYPNSNLLKSYFPDIRFNKNNTAQLVKWFSNFREFYY 482


>U41558-3|AAK39244.1|  556|Caenorhabditis elegans Innexin protein 7
           protein.
          Length = 556

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +3

Query: 477 ERRKVLSKIVNKGCFFFLN*KRKSFFLWF-YAEAAVIVLINCVIRKGFIEKF 629
           ++R  L KIV      FLN K  ++++ F Y  A V  L+N +++   + K+
Sbjct: 190 QKRLKLKKIVPHKILRFLNIKYSAYYVTFIYFVAKVAFLLNVILQSKLLNKY 241


>AF024503-6|AAG24094.1|  388|Caenorhabditis elegans Hypothetical
           protein F31F4.17 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +2

Query: 206 IFNYKLLVLNL*IQKLNCFTIEIL---IKIYLVFFFYHYVLTY 325
           I  + L +  L +QK NC++ +++   I ++++ FF +  LTY
Sbjct: 18  IMRFLLFLQLLKMQKSNCYSTKLIRYNIIVFIILFFAYNCLTY 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,460,582
Number of Sequences: 27780
Number of extensions: 224893
Number of successful extensions: 455
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)