Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_L23
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.052
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 32 0.091
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 31 0.21
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 27 2.6
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 26 4.5
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 4.5
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 6.0
SPAC23H4.08 |||RNA polymerase II associated protein |Schizosacch... 26 6.0
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 6.0
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 7.9
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 32.7 bits (71), Expect = 0.052
Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Frame = -2
Query: 354 AAPSFVKAAQLVPAAIEAP-AVPLDTPEVVAARAAHLESKAQALADAHVVHKRSVVASVY 178
A+ F+ AAQ + + + A + P +TP ++A H + A L+ + KR+ + Y
Sbjct: 6 ASTLFLLAAQSLNSGVSASLSDPANTPTILADDIVHGYTPATYLSSVPTLLKRATTSYNY 65
Query: 177 STSLGTPVVSTYSAAPVVSTHLTYSAPIVTPLVTKT 70
+TS + S+ +++ S+ LT S+ + + T
Sbjct: 66 NTSSASS--SSLTSSSAASSSLTSSSSLASSSTNST 99
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 31.9 bits (69), Expect = 0.091
Identities = 22/65 (33%), Positives = 34/65 (52%)
Frame = -2
Query: 198 SVVASVYSTSLGTPVVSTYSAAPVVSTHLTYSAPIVTPLVTKTYGIHTW*AAPLYTRSII 19
SV+ + TS TPV T S++ + S +YS + T T T G T ++P Y+ S +
Sbjct: 243 SVLPTSIITSTSTPV--TVSSSSLSSFTPSYSTNLTTTGSTTTTGSATVSSSPFYSNSSV 300
Query: 18 LPCFV 4
+P V
Sbjct: 301 IPTSV 305
Score = 26.2 bits (55), Expect = 4.5
Identities = 20/62 (32%), Positives = 30/62 (48%)
Frame = -2
Query: 189 ASVYSTSLGTPVVSTYSAAPVVSTHLTYSAPIVTPLVTKTYGIHTW*AAPLYTRSIILPC 10
+SV TS+ + V S S++ +T LT S VT T T + P Y+ S ++P
Sbjct: 298 SSVIPTSVPSSVSSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYSNSSVIPT 357
Query: 9 FV 4
V
Sbjct: 358 SV 359
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/83 (22%), Positives = 39/83 (46%)
Frame = -2
Query: 267 AARAAHLESKAQALADAHVVHKRSVVASVYSTSLGTPVVSTYSAAPVVSTHLTYSAPIVT 88
+A A S ++A + + +VV+S+ ++S+ + VS+YS + +A I T
Sbjct: 346 SASATATSSAESSIATSPITSSSNVVSSISTSSMDSSAVSSYSVVQSSLASIISNAYIAT 405
Query: 87 PLVTKTYGIHTW*AAPLYTRSII 19
G+ T A+P + + +
Sbjct: 406 SKSGLNSGVSTLLASPTSSSTFV 428
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.1 bits (57), Expect = 2.6
Identities = 16/73 (21%), Positives = 32/73 (43%)
Frame = -2
Query: 300 PAVPLDTPEVVAARAAHLESKAQALADAHVVHKRSVVASVYSTSLGTPVVSTYSAAPVVS 121
P P E+ ++ L S + +V + +++ +ST+ + +VS S P V+
Sbjct: 692 PKKPASPVEITEPPSSALVSATSPTTNVPIVPEAVHLSTAFSTAPVSTIVSNISPLPTVA 751
Query: 120 THLTYSAPIVTPL 82
+P TP+
Sbjct: 752 PPNVSGSPSETPI 764
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = -2
Query: 192 VASVYSTSLGTPVVSTYSAAPVVSTHLTYSAPIVTPLVT 76
V+S++S P ++ +P VS+ +++AP TP T
Sbjct: 466 VSSIFS--FNAPSAASTKPSPAVSSTFSFNAPTTTPSAT 502
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -2
Query: 216 HVVHKRSVVASVYSTSLGTPVVSTYSAAPVVSTHLTYSAPIVTP 85
H+ H+RS A + S P+ Y+++PV + +S+ + P
Sbjct: 470 HLGHRRSSTADNGTLSSNVPLYPAYNSSPVQTRTSLFSSRLSKP 513
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 25.8 bits (54), Expect = 6.0
Identities = 26/101 (25%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Frame = -2
Query: 363 PAIAAPSFVKAAQLVPAAIEAPAVPL--DTPEVVAARAAHLESKAQALADAHVVHKRSVV 190
P++ P A VP+ + PAVP+ + P V AA + + ++ V
Sbjct: 602 PSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVVPEA 661
Query: 189 ASVYSTSLG-----TPVVSTYSAAPVVSTHLTYSAPIVTPL 82
SV P V A PVV + P+V PL
Sbjct: 662 PSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEPVVPPL 702
>SPAC23H4.08 |||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 277
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/45 (26%), Positives = 19/45 (42%)
Frame = -2
Query: 246 ESKAQALADAHVVHKRSVVASVYSTSLGTPVVSTYSAAPVVSTHL 112
ES D +H + ++S+ + G PVV T TH+
Sbjct: 63 ESSEPTHEDVRNIHSHTKISSLKKNNYGIPVVQTSEDVVKAPTHM 107
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -2
Query: 366 TPAIAAPSFVKAAQLVPAAIEAPAVPLDTPEVVAARAAHLESKAQA 229
+P+I + A P + AP PL P V A+H S ++
Sbjct: 245 SPSIQVSNNQNANNSTPLSFHAPIPPLHVPAVPLTSASHSSSDGKS 290
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Frame = +1
Query: 262 SSDHFWSVKRNCWCFDCGRY*LSGFNKR-GCRNSRCKCTQKSRCD 393
SS++F C C C R ++GF K + C+ KS D
Sbjct: 221 SSNYFGLENCECLCVSCERMGINGFKKLFHTSATSTSCSSKSSSD 265
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,263,908
Number of Sequences: 5004
Number of extensions: 38855
Number of successful extensions: 135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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