Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_L23
(703 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0381 - 20794385-20794612,20794671-20794796 33 0.22
09_06_0150 - 21225086-21225511,21225775-21226125,21227180-212277... 30 2.0
05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531 29 2.7
04_04_0456 - 25355409-25355751,25356047-25356205,25356317-253565... 29 2.7
03_02_0098 + 5608787-5610812,5610956-5611053 29 2.7
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 3.6
03_05_1029 - 29835389-29835979 29 3.6
03_05_0756 + 27469002-27469107,27469200-27469369,27470210-274710... 29 3.6
01_06_0039 + 25857805-25858894,25858997-25859345,25860019-258601... 29 3.6
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 29 4.7
06_01_0817 - 6185881-6187074 29 4.7
04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067 29 4.7
02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,881... 28 6.2
03_06_0067 + 31430669-31430852,31430954-31431099,31431227-314316... 28 8.3
>05_04_0381 - 20794385-20794612,20794671-20794796
Length = 117
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 520 LAGDGCGGNDSCWCSEDSRLS*GGADGD 603
+AGD C G D W ED GG GD
Sbjct: 71 VAGDECAGTDGDWAEEDGSAKEGGGGGD 98
>09_06_0150 -
21225086-21225511,21225775-21226125,21227180-21227718,
21227813-21227929,21228038-21228290
Length = 561
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 186 SVYSTSLGTPVVSTYSAAPVVSTHLTYSAPIVTP 85
S+++ +G PV S +P H Y++P TP
Sbjct: 465 SIFNRGIGVPVQKRISPSPFSIQHTPYASPFATP 498
>05_07_0017 + 27070332-27071886,27072238-27072344,27072427-27072531
Length = 588
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -2
Query: 369 FTPAIAAPSFVKAAQL-VPAAIEAPAVPLDTPEVVAARAAHLE-SKAQALAD 220
FTP +A P+F A Q+ P +++ V L + + A E A +LAD
Sbjct: 382 FTPQVAEPTFASAIQIGDPVSVDRAVVALKATDGIVEEATEEELMNAMSLAD 433
>04_04_0456 -
25355409-25355751,25356047-25356205,25356317-25356513,
25356602-25356794,25357044-25358287
Length = 711
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 306 EAPAVPLD---TPEVVAARAAHLESKAQALADAHVVHKRSV 193
+APA PL+ TP AA AA + + AD H H+R +
Sbjct: 243 DAPAPPLNSTATPRAAAAAAATPSTPPERKADTHHSHRRGI 283
>03_02_0098 + 5608787-5610812,5610956-5611053
Length = 707
Score = 29.5 bits (63), Expect = 2.7
Identities = 28/88 (31%), Positives = 38/88 (43%)
Frame = -2
Query: 315 AAIEAPAVPLDTPEVVAARAAHLESKAQALADAHVVHKRSVVASVYSTSLGTPVVSTYSA 136
AA+ AP P + P + A R L A+ALAD V R +VY V+ +Y+
Sbjct: 104 AAMAAPDDP-ELPSLGAIRCMSL-LLARALAD---VEWRRRGRNVYVPYYAAHVIGSYTI 158
Query: 135 APVVSTHLTYSAPIVTPLVTKTYGIHTW 52
L +A V PL+ G TW
Sbjct: 159 RSSAHAELAVAAGAVRPLLAFLGGAMTW 186
>04_04_1405 -
33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 153 VSTYSAAPVVSTHLTYSAPIVTPLVTKTY 67
++TY+A +V THL S P+ P + K +
Sbjct: 1 MATYAAVHIVCTHLILSLPLRAPAMVKAF 29
>03_05_1029 - 29835389-29835979
Length = 196
Score = 29.1 bits (62), Expect = 3.6
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -2
Query: 357 IAAPSFVKAAQLV---PAAIEAPAVPLDTPEVVAARAAHLESKAQALADAHVVHKRSVVA 187
+AA FV AA + PAA A AVP VAA+ A+ S + A AD + A
Sbjct: 11 MAAACFVLAALAMWAAPAACGARAVPRGAGAGVAAQQANASSSSSAAADEFLAPHNQARA 70
Query: 186 SV 181
+V
Sbjct: 71 AV 72
>03_05_0756 +
27469002-27469107,27469200-27469369,27470210-27471001,
27471182-27471398,27471972-27472150,27472592-27472833,
27473662-27474052
Length = 698
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +1
Query: 364 CKCTQKSRCDGRCS--KRCNCSSSDWGAD 444
C TQ S C GRCS NC S G+D
Sbjct: 302 CDRTQSSNCAGRCSCNSDVNCDPSKLGSD 330
>01_06_0039 +
25857805-25858894,25858997-25859345,25860019-25860104,
25860242-25860399,25861489-25861565,25861656-25861722
Length = 608
Score = 29.1 bits (62), Expect = 3.6
Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 2/129 (1%)
Frame = -2
Query: 501 STPAVTSTLVSGAPLAYXXXXXXXXXXXXXXXXXXXXXXXXXXTFTPAIAAPSFVKAAQL 322
S + +TLV G PL F A + A Q
Sbjct: 99 SLSTLPNTLVMGIPLLIAMYGPYSGSLMVQIVVLQCIIWYTLMLFLFEFRAARMLIADQF 158
Query: 321 VPAAIEAPAVPLDTPEVVAARAAHLESKAQALADA--HVVHKRSVVASVYSTSLGTPVVS 148
A ++ +D P+VV+ H E++A+ AD HV +RS V+ + L TP S
Sbjct: 159 PDTAASIVSLHVD-PDVVSLEGGHAETEAEVAADGRLHVTVRRSSVSR--RSLLVTPRPS 215
Query: 147 TYSAAPVVS 121
+ A + S
Sbjct: 216 NLTGAEIYS 224
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 28.7 bits (61), Expect = 4.7
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 424 CCNYTSCCNGHRTCSSEYI-YTCYC 353
CC+ S C G+ +++Y Y CYC
Sbjct: 183 CCSANSFCKGYNGTTADYDGYRCYC 207
>06_01_0817 - 6185881-6187074
Length = 397
Score = 28.7 bits (61), Expect = 4.7
Identities = 31/91 (34%), Positives = 37/91 (40%), Gaps = 7/91 (7%)
Frame = -2
Query: 363 PAIAAPSFVKAAQLVPAAIEAPAVPLDTP---EVVAARAAHLESKAQALADAHVVHKRSV 193
PAI AP+ A L P P P P +V A R + A+ A H H
Sbjct: 63 PAINAPTNTAAIVLSPVPQPLPVPPASPPFAFQVPAKRITSPDDIARFHASVHGRHFLGF 122
Query: 192 V----ASVYSTSLGTPVVSTYSAAPVVSTHL 112
V ASV+ L P+ S S PVVS L
Sbjct: 123 VAALSASVHGRKLSDPLPSPPS--PVVSALL 151
>04_03_0243 - 13271384-13272865,13272987-13273248,13274617-13276067
Length = 1064
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 117 GWRQQELLSMSILLEYPKKWSTLKQQLNACG 209
GW E + L+E +KWS L ++L+ CG
Sbjct: 563 GWLVPEPPKENYLIELKRKWSRLCRKLHLCG 593
>02_02_0307 - 8809724-8811589,8811681-8811762,8812130-8812242,
8812361-8812492,8812681-8812864,8813002-8813135,
8813552-8813656,8813738-8813839,8813930-8814022,
8814136-8814456,8814595-8814696,8814791-8814853,
8815213-8815708,8815964-8816124,8816213-8816743,
8817077-8817118,8817203-8817334,8817639-8817703,
8817858-8818169,8818262-8818334,8818425-8818517,
8819440-8819501,8819740-8819809
Length = 1777
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = -2
Query: 261 RAAHLESKAQALADAHVVHKRSVVASVYSTSLGTPVVSTYSAAPVVSTHLTYSAPIVTPL 82
RA S + L V K+ V +S +++ G+P +S+ SA + + ++P TP
Sbjct: 1275 RAPSNFSSPRVLPSEAVTAKKLVKSSSFNSKPGSPAISSNSAENSSNPNSLSASPATTPA 1334
Query: 81 VTK 73
K
Sbjct: 1335 AAK 1337
>03_06_0067 +
31430669-31430852,31430954-31431099,31431227-31431614,
31431707-31431783,31431922-31432146
Length = 339
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = -2
Query: 360 AIAAPSFVKAAQLVPAAIEAPAVPLDTPEVVAARAAHLESKAQALADAHVVHKRSVVASV 181
A+A P + + + V + PA+PL P + + A A D H R VVAS
Sbjct: 135 AVAPPPYFRREERV---VLRPAMPLLPPASHRSPPPAAAAAATAAGDDH----RHVVASS 187
Query: 180 YSTSLGTPVVSTYS 139
++T++ +PV + S
Sbjct: 188 FATAVPSPVPAALS 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,074,054
Number of Sequences: 37544
Number of extensions: 314480
Number of successful extensions: 1131
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1131
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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