Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_L19
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z34533-4|CAA84299.2|  577|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z81113-4|CAB03281.2|  388|Caenorhabditis elegans Hypothetical
           protein T03F6.4 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
 Frame = +2

Query: 149 RSEEILLKRSKEILLRRSKDLPESSMRYVDSVINNKRRWSVR--MFQFAMQHAAARVPNE 322
           R E  LL    E+LL+  ++LP   + +  + +NN+ R  V+  +    +  A   V   
Sbjct: 2   REEPTLLNLPNEVLLKVIRNLPRHDIFFGVAHVNNRFRGLVQKNLKTIRLFEAHCHVNIV 61

Query: 323 SRLTLSFAFHFGTDPAVDPDVSFAHPRVPYSVVKR 427
               LS     GTDP +    +    R P    KR
Sbjct: 62  DNRPLSKYREDGTDPIITYSFTLFDTRGPEFTQKR 96


>Z68314-7|CAA92662.2|  872|Caenorhabditis elegans Hypothetical
           protein F07H5.8 protein.
          Length = 872

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 283 VCNATCRCEGAKRISPDT*FCFSLRYRPSRGS*-RQLRAPTCPLLCCETC 429
           +C+ TC+    K  +P T    S  + P +    +Q +A  CP  C ++C
Sbjct: 135 LCDKTCQFTCNKACTPSTSTSSSSNFPPIKVVVNQQTKASQCPQACAQSC 184


>Z34533-4|CAA84299.2|  577|Caenorhabditis elegans Hypothetical
           protein B0285.6 protein.
          Length = 577

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -2

Query: 255 LLLMTESTYRIEDSGRSFERLNNISFERFNNISSERFNDSKC 130
           ++L+  +T+ I+  G  FE+  N+ F+  N+    R  + KC
Sbjct: 1   MILIINNTFDIDQKGFYFEKKVNLKFQLSNDKLWHRSLEGKC 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,555,062
Number of Sequences: 27780
Number of extensions: 225719
Number of successful extensions: 662
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)