Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_L14
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    37   0.015
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    32   0.32 
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z68159-4|CAA92285.1|  323|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U13019-7|AAC24445.2|  689|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 36.7 bits (81), Expect = 0.015
 Identities = 26/132 (19%), Positives = 58/132 (43%), Gaps = 7/132 (5%)
 Frame = -3

Query: 568 VHLQFADIETVLSETSFRVAPVACMIVXXXXXXXXXXXXXXXIRESNCMLVTYAIFMLVL 389
           + L+F ++  +L +      P+  +++               IRE+ C+ V++A+ + +L
Sbjct: 34  LQLKFDNVLDILGDERL-ATPILLLVIGSLCTLLGFLGCCGAIRENYCLTVSFAVLLALL 92

Query: 388 MALKLTLGVMVFVNLDGVVAAIPNWMNKTFQQDQDTFHVIE-----HR-FSCCGPTGPGS 227
           +  ++   ++ +   D     I N +     +  ++  V       H+ F CCG T    
Sbjct: 93  ITCEIAAVIIGYALHDSFRLGIGNQLQTGMVRYHESRGVESAWDKTHQLFECCGVTNSSD 152

Query: 226 YLSL-TLPITCC 194
           +L+  T+P +CC
Sbjct: 153 WLTFTTIPDSCC 164


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 32.3 bits (70), Expect = 0.32
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 392 VDGTETDLGRNGVCESRRSSCCYPELDEQDLP 297
           +DG+  D+  +G C +R+S+C     DE+ +P
Sbjct: 288 IDGSVIDIAHSGACRARKSTCITCPKDEKKIP 319


>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
           protein H11E01.3 protein.
          Length = 1464

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +2

Query: 305 LVHPVRDSSNYS--VEIHKHHYAQGQFQCHQHQHEDRVGDKHAVALPDGTAASEECNDES 478
           +VH V+  +  S  +++H  H  +  F  H    +  V   H      G    E+ +DE+
Sbjct: 498 VVHHVQTEAQQSPVIDVHSTHVVE-HFDTHDESPQSPVLSVHG-----GEEGYEDHHDEA 551

Query: 479 DAPNNHTGHRRYSE 520
              + HT H+ +SE
Sbjct: 552 PVLSVHTDHKAHSE 565


>Z68159-4|CAA92285.1|  323|Caenorhabditis elegans Hypothetical
           protein C33D9.4 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
 Frame = -3

Query: 412 YAIFMLVLMALKLT-LGVMVFVNLDGVVAAIPNWMNKTFQQDQDTFHVIEHRFSCCGPTG 236
           Y  F  V+ A+ L+ +   +FV    V+     W +K    D+  F  I   F C     
Sbjct: 17  YFTFSTVIAAIPLSYMPPTIFVMFKIVLTY---WKSKNVSMDRHIFTFISINFFCSLSFF 73

Query: 235 PGSYLSLTLPITCCSTTPCTVI 170
              Y  +TLP T   T+ C  +
Sbjct: 74  FSDYFRITLPATGIFTSWCASV 95


>U13019-7|AAC24445.2|  689|Caenorhabditis elegans Hypothetical
           protein T12A2.6 protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -3

Query: 394 VLMALKLTLGVMVFVNLDGVVAAIPNWMNKTFQQDQDTFHVIEHR 260
           VL+    TLG   F  L   +  IP  MN  +++D +  +  EHR
Sbjct: 210 VLVTCHHTLGPENFGKLGDFLEIIPFQMNGMYRKDSEFLYFYEHR 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,734,299
Number of Sequences: 27780
Number of extensions: 286626
Number of successful extensions: 925
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)