Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_L04
         (326 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   1.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    23   8.8  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    23   8.8  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 96  RQNSQEVSRRNMQSTQQVKYTQRQLGR 176
           +Q +Q+  + N  S QQ++Y   +LG+
Sbjct: 541 KQRNQKFLKNNATSIQQIQYLDEELGK 567


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +1

Query: 202 QRLCGSKRKNSSEQQIFEHVD*SGLV*PS 288
           ++LC  +R+N+ E++I  H +  G+  P+
Sbjct: 190 KKLCIGQRRNAKEERILFHYNGHGVPMPT 218


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 23.4 bits (48), Expect = 8.8
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +3

Query: 24  SIAFKIAFWLSISARXKCMGPSRCRQNSQEVSRRNMQSTQQVKYTQRQLGRCRQ 185
           +I  KI   L+I  R   +     R  S+ +SRR  +  Q++   QR+L    Q
Sbjct: 194 AIREKIGRELNIPERSVTIWFQNRRAKSKLISRRQEEERQRILREQRELDSLNQ 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 913,865
Number of Sequences: 5004
Number of extensions: 11520
Number of successful extensions: 33
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)