Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_L04
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0939 + 26131405-26131596,26132753-26133166                       27   3.5  
04_03_0825 - 20092781-20092801,20092844-20093079,20093166-200932...    26   8.0  

>06_03_0939 + 26131405-26131596,26132753-26133166
          Length = 201

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 39  IAFWLSISARXKCMGPSRCRQNSQEVSRRNMQSTQQVKYTQR 164
           +A+W ++S R  C   + C    QEV+  + QS  +++   R
Sbjct: 61  VAWWKAVSERGDCTYGTTCLFVPQEVTGGSPQSISRIRVAAR 102


>04_03_0825 -
           20092781-20092801,20092844-20093079,20093166-20093244,
           20093344-20093482,20093533-20093624,20093714-20093830,
           20093930-20094041,20094154-20094260,20094351-20094427,
           20094517-20094598,20094702-20094839,20095495-20095608
          Length = 437

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -2

Query: 109 WLFCLHLLGPIHLXRALIDNQKAILNAIEFRLCDTV 2
           WL C+HL  P      L+D+  A L AI     D V
Sbjct: 26  WLTCVHLFMPEMPLMILVDDAGAFLPAINHSPWDGV 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,787,970
Number of Sequences: 37544
Number of extensions: 77933
Number of successful extensions: 231
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)