Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_L04
         (326 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z78410-11|CAB01639.2|  315|Caenorhabditis elegans Hypothetical p...    25   9.7  
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    25   9.7  

>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 163 RCVYFTCCVLCIFRLLTSWLF-CLHLLGP 80
           R ++  CC++C F   T+ ++  L L+ P
Sbjct: 238 RAIFIQCCIICFFNTATALIYNALSLMTP 266


>Z78410-11|CAB01639.2|  315|Caenorhabditis elegans Hypothetical
           protein C51E3.4 protein.
          Length = 315

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -2

Query: 175 RPSCRCVYFTCCVLCIFRLLTSWLFCLHLLG 83
           R  C  +    C+  +  L   +++C+HL G
Sbjct: 41  RSPCHILISLTCICDLLHLCAQFVYCVHLFG 71


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 3   TVSHNRNSIAFKIAFWLSISARXKCMGPSRCRQNSQEVSR--RNMQSTQQ 146
           +VS + N +      +  +S   +C+G  +C  NSQ +S   +  Q TQQ
Sbjct: 381 SVSCSTNQVCISNQCYNYVSIGSQCVGSQQCLSNSQCISSICQCPQGTQQ 430


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,246,407
Number of Sequences: 27780
Number of extensions: 71142
Number of successful extensions: 258
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)