Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_L02
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    29   0.81 
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    28   1.4  
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|...    26   5.7  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    26   5.7  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   7.6  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   7.6  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    25   7.6  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   7.6  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   10.0 

>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 28.7 bits (61), Expect = 0.81
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +1

Query: 1   TGLLFLFDTIRFG--HSVPFSTVPAIFSNFSIKXXLHSHAIISLF 129
           TGLL++++   F   HS P ST+P   SNFS+       +I   F
Sbjct: 558 TGLLYIWNIKNFEAIHS-PVSTLPLFHSNFSVSKIARGPSIEQFF 601


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 447 KKNCIHLFGRKCFHKFFALHC 385
           K  C H+FG+ C  K+   HC
Sbjct: 124 KMPCGHIFGKNCLQKWLENHC 144


>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -1

Query: 675 WFSHCPPTQYFFHQ 634
           WF HCPP Q+   Q
Sbjct: 7   WFIHCPPLQWTLDQ 20


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 386 QCKAKNLWKHFRPKRCMQFFFLN 454
           QCK+KNL+   + + C++ + LN
Sbjct: 130 QCKSKNLYDSLKLEECIESWSLN 152


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 455 YISLMYKSKKKTLILDCPVPKYNLSKQLGPTKQKRLNRHFFYSVQYS 595
           Y SL+  S K  L +      Y  SK+LGPT+    + +   SV YS
Sbjct: 193 YTSLLSWSPKGDLAIGLAENIYLWSKELGPTRVLEESIYDVSSVAYS 239


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 451  KLHIIDVQIEKKNINLRLSSSQI*SLKTIRAHETEK 558
            + H++DV  EK+ I L L SS   S   I   + E+
Sbjct: 1289 RAHVLDVDSEKRRIALGLKSSYFDSDSDISMSDNEE 1324


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 51  FFNGSSHLLQFF-NQAXFALTCHHLSVFCXVSLKI 152
           FF GSS +L FF NQ    LT      F  +  +I
Sbjct: 20  FFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEI 54


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 470  YKSKKKTLILDCPVPKYNLSKQLGPTKQKRLNRHFFYS 583
            Y    K ++LD PV +   SK+  P +   L    FYS
Sbjct: 1221 YLDNIKYVLLDAPVFRRQTSKEPYPARMDDLGSAIFYS 1258


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +2

Query: 470 YKSKKKTLILDCPVPKYNLSKQLGPTKQKRLNRHFFYSV 586
           YK   K ++LD P+ +   S    P +   ++   FYSV
Sbjct: 332 YKDNIKYVLLDSPIFRKRTSHDPYPPRMDDISSAIFYSV 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,992
Number of Sequences: 5004
Number of extensions: 45474
Number of successful extensions: 143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)