Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_L02
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1512 + 27627740-27629009,27629111-27629256,27629842-276301...    33   0.28 
04_04_1373 + 33025059-33025422,33025510-33025551,33025836-330260...    31   0.84 

>08_02_1512 +
           27627740-27629009,27629111-27629256,27629842-27630101,
           27630346-27630412,27630511-27630545,27630818-27631587,
           27631633-27631793
          Length = 902

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/58 (31%), Positives = 31/58 (53%)
 Frame = +1

Query: 481 KKNINLRLSSSQI*SLKTIRAHETEKIESTFFLQCSIFSSSTPNLYLCIKALMEEILC 654
           +K+  L++SS  I  L ++   E  + E    ++C   SS+   LY+  K L+EE+ C
Sbjct: 417 QKSSGLKVSSMMICGLSSV-GEEFLQFEEDKAMECGNLSSTLQKLYMWEKKLLEEVKC 473


>04_04_1373 +
           33025059-33025422,33025510-33025551,33025836-33026054,
           33026145-33026384,33026483-33027508,33027770-33028545
          Length = 888

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 28  IRFGHSVPFSTVPAIFSNFSIKXXLHSHAIISLFFVLXH*KSFSSHLM 171
           I F H+    +VPA   N  +   +H H I+ +F+V    + + SHLM
Sbjct: 646 IDFSHNKLSGSVPACIGNI-LFGDVHDHDILQIFYVEPFIELYDSHLM 692


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,173,007
Number of Sequences: 37544
Number of extensions: 233955
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)