Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_L02
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82284-6|CAE17979.1|  342|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical pr...    27   9.2  

>Z82284-6|CAE17979.1|  342|Caenorhabditis elegans Hypothetical
           protein T27E7.9 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 114 HHLSVFCXVSLKIFLFSSHVHYKI**QVMFMYVYYIIVS*YFHVHLYMAXPTYTVSQF 287
           H  + FC   L  F  ++H HY I    + + V  ++ +  F ++LY   P + + +F
Sbjct: 45  HFFAHFCCTFLPEFAITNHAHYVIKNYFVKVMVGSVVFA-LFVLYLYFRFPHFYIFEF 101


>U23522-1|AAC46819.3|  962|Caenorhabditis elegans Hypothetical
           protein W06B4.3 protein.
          Length = 962

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 410 KHFRPKRCMQFFFLNYISLMYKSKKKTLILD 502
           +HF  + C++   ++++S     K KTLI+D
Sbjct: 860 RHFFHRECLEIAMISFLSQEEVEKMKTLIID 890


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,483,193
Number of Sequences: 27780
Number of extensions: 252311
Number of successful extensions: 646
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)