Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_L02
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    27   0.12 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   8.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 497  LDCPVPKYNLSKQLGPTKQKRLNRHFFYSVQYSVHPHPI 613
            LD   PK N+  ++ P K +  +R F YSV   V  H I
Sbjct: 1009 LDVNTPKGNMQWKIWPMKGEEKSRLFHYSVVPFVSNHDI 1047


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 24  YNSXWSQRPFFNGSSHLLQFFNQAXFALTCHHLS 125
           Y S W +  F N +S  ++ FN     L   H S
Sbjct: 228 YVSQWEEVYFLNMASVFMRIFNLICMMLLIGHWS 261


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 669 SHCPPTQYFFHQCFYT 622
           SHC   Q FF+Q + T
Sbjct: 192 SHCVVCQNFFYQIYAT 207


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,605
Number of Sequences: 438
Number of extensions: 3114
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)