Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_K21
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.3  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   5.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   5.3  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   7.0  
SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomy...    25   9.3  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   9.3  

>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -2

Query: 497  NKM*CGVCKCVPVVRKCICGSSPQYNYFSFR 405
            N +  G  KC PVV K I  S PQ  +F+ R
Sbjct: 3072 NSLSKGDTKCAPVVLKKIAKSYPQALFFTLR 3102


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
 Frame = +2

Query: 503 TYFSRDDAHQSTILDTRT-QNRFAVTSGRYVAVRAQNRADFRQSLP--ASTNVRLRF--- 664
           +YF R   H   I D  T Q     T   ++   A + A  R S    +S + R+ +   
Sbjct: 506 SYFQRLIDHNMQIYDDETIQKAGEATVSSWLNTPALSAASARTSSGRNSSESDRVSYFGL 565

Query: 665 VPINLCMYDLRR----LRHLQDKSSDIKVPNNIWTVG 763
            P+N    D  R    +R L  K  ++ V NN  TVG
Sbjct: 566 APVNATTQDSERNGEEIRRLASKQLNVPVNNNFRTVG 602


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +2

Query: 476 IHHITFYSDTYFSRDDAHQSTILDTRTQNRFAV 574
           +H  T +  + F  DD H   + +++  NR+ V
Sbjct: 332 VHDTTAFDPSTFDDDDGHYKVVPNSKFANRYTV 364


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 298 CQFTPDIG*IGTAITLPIISLK*KNNVTVYHL 203
           C+F+PD   + TA+T P   L+  N++ ++H+
Sbjct: 359 CEFSPDSQFLLTAVTSP--RLRVDNSIKIWHI 388


>SPBC83.05 |||mitochondrial RNA-binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +3

Query: 438 PTYTLTHNWYAFTYTTLH-FIPTHI 509
           PT+T   +W   TY + H +IP H+
Sbjct: 618 PTFTPEESWTLITYLSQHEYIPYHM 642


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -1

Query: 582 PDVTANRFWVRVSNIVDWCASSRL 511
           PD++   F   + NI DWC S +L
Sbjct: 496 PDMSRREFIRWMENIQDWCISRQL 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,201,592
Number of Sequences: 5004
Number of extensions: 67478
Number of successful extensions: 144
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)