Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_K18
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    29   0.68 
SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   8.4  

>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 310 NVTKCTLTQVARYFHLKIFTNKKKYFDKIKCNVY--LNVTAKFKRPNMELRHCVNK 149
           N  KCT   +  +  L I  +K KY   I C+V   LN T   +R      + +NK
Sbjct: 53  NKLKCTFFMIEEWHLLAILYDKSKYIKIIICSVLLKLNTTVIIRRNTHTKVYVMNK 108


>SPAC7D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 31  TMKNNDMVTLKYELQNVNDITILQMFMQLFL 123
           TM   D    KY L+N+N I  LQ+F+ L L
Sbjct: 211 TMSLTDDFYNKYVLENLNIINNLQIFLHLDL 241


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 92  LYYKCLCNCFCRFFICNT 145
           +Y KC   CFC  FI NT
Sbjct: 2   VYIKCRYVCFCCAFISNT 19


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,436,311
Number of Sequences: 5004
Number of extensions: 44184
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)