Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_K18
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine re...    32   0.37 
L14324-4|AAA28184.1|  159|Caenorhabditis elegans Hypothetical pr...    31   1.1  

>AF068713-9|AAC17800.1|  284|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 68 protein.
          Length = 284

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 90  NYITNVYAIVFVDFLYVIQFLF-TQWRSSIFGLLNLAVTFRYTLHLILSKYF 242
           N+   + A++  +   V  F+F T W + IFG++  ++ F  TL  ++S +F
Sbjct: 61  NFKLYILAVMISEIFAVKNFIFITLWLTIIFGIIRTSLLFLTTLDRVISLFF 112


>L14324-4|AAA28184.1|  159|Caenorhabditis elegans Hypothetical
           protein ZK112.5 protein.
          Length = 159

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 584 RCLESYDQNYIIFQNIITLSIFQDLNVSASIL 489
           R L+ Y +N++ F+N++ L   QDL    ++L
Sbjct: 50  RVLDKYHENHVAFENVLVLDAPQDLETIVNLL 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,026,754
Number of Sequences: 27780
Number of extensions: 235732
Number of successful extensions: 508
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)