Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_K17
         (532 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58761-6|AAB00716.1|  312|Caenorhabditis elegans Hypothetical pr...   199   9e-52
U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical pr...    31   0.39 
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    31   0.39 
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    31   0.39 
Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical pr...    30   0.90 
Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U61958-3|AAB03180.2|  149|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z81526-5|CAB04262.1|  983|Caenorhabditis elegans Hypothetical pr...    29   2.1  
Z37092-6|CAE46667.1|  334|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z37092-5|CAA85456.1|  336|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    27   8.4  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    27   8.4  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    27   8.4  

>U58761-6|AAB00716.1|  312|Caenorhabditis elegans Hypothetical
           protein C01F1.2 protein.
          Length = 312

 Score =  199 bits (486), Expect = 9e-52
 Identities = 86/169 (50%), Positives = 125/169 (73%), Gaps = 2/169 (1%)
 Frame = -2

Query: 531 IGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPP 352
           IGG +EL+N++GK+  S +  G W+L+YFGFT+CPDICPDE+EK+ +VV++ +    + P
Sbjct: 137 IGGEWELMNTDGKMEGSQELRGNWLLMYFGFTNCPDICPDEIEKMVKVVEIIEAKKDATP 196

Query: 351 LQPVFISVDPQRDTPELVGKYCKEFTPRLLGLTGTKEQVQQACKSYRVYFSAGPQ--DVD 178
           + PVFISVDP+RD+   V +YC EF+ +L G TGT EQV +  K++RVY S GP+    +
Sbjct: 197 IVPVFISVDPERDSVARVKEYCSEFSNKLRGFTGTTEQVNKVAKTFRVYHSQGPRTNKQE 256

Query: 177 NDYIVDHTIIVYLVNPDGEFVDYYGQNRNAKEIYESMLVNIKKYEAAKK 31
           +DYIVDHT+I+YL++P G+F DYYGQNR A+EI   + + + KY+A  +
Sbjct: 257 DDYIVDHTVIMYLIDPSGQFHDYYGQNRKAEEIANVIEMKVLKYQAQNR 305


>U22832-3|AAA64508.2|  359|Caenorhabditis elegans Hypothetical
           protein C09F5.3 protein.
          Length = 359

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
 Frame = -2

Query: 456 LIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPVFISVDPQRDTPELVGKYCKEF 277
           LI +G   C    P +L  +  V   HD+    PP  P+     P + TP+     C   
Sbjct: 235 LIMYGCALCATSYPSQLHLITHVQMSHDQETFYPPSLPIPTPPSP-KSTPKQRVLQCSVC 293

Query: 276 TPRLLGLTGTKE-QVQQACK 220
              +LG  G  E ++++ CK
Sbjct: 294 DESVLGEDGLDEHRLRKHCK 313


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 186   DVDNDYIVDHTIIVYLVNPDGEFVDYYGQNRNAKEIYESM-LVNIKKYEAAK 34
             +  NDY VD   I+  V   G F++ Y +   + EI  S+  V +K+ E AK
Sbjct: 12251 EAKNDYGVDKCTILLDVRDSGSFIEDYSEIHRSAEIQNSVGDVQVKEGETAK 12302


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = -2

Query: 186   DVDNDYIVDHTIIVYLVNPDGEFVDYYGQNRNAKEIYESM-LVNIKKYEAAK 34
             +  NDY VD   I+  V   G F++ Y +   + EI  S+  V +K+ E AK
Sbjct: 12251 EAKNDYGVDKCTILLDVRDSGSFIEDYSEIHRSAEIQNSVGDVQVKEGETAK 12302


>Z32683-2|CAA83619.1|  226|Caenorhabditis elegans Hypothetical
           protein R07E5.2 protein.
          Length = 226

 Score = 30.3 bits (65), Expect = 0.90
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = -2

Query: 513 LVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDEL 406
           +V+ + K++   D+ GKW++++F       +CP E+
Sbjct: 47  VVDGDFKVISDQDYKGKWLVMFFYPLDFTFVCPTEI 82


>Z78015-4|CAB01436.2|  149|Caenorhabditis elegans Hypothetical
           protein R02D5.7 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 444 GFTHCPDICPDELEKLAEVVD 382
           G+ +C D+ PD+L+K+AE  D
Sbjct: 126 GYENCQDMTPDQLKKIAEQAD 146


>U61958-3|AAB03180.2|  149|Caenorhabditis elegans Hypothetical
           protein C25A8.2 protein.
          Length = 149

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 444 GFTHCPDICPDELEKLAEVVD 382
           G+ +C D+ PD+L+K+AE  D
Sbjct: 126 GYENCQDMTPDQLKKIAEQAD 146


>Z81526-5|CAB04262.1|  983|Caenorhabditis elegans Hypothetical
           protein F33H2.1 protein.
          Length = 983

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +2

Query: 326 STDMKTGCKGGDDGVLSCKSTTSANFSNS 412
           ST+ KT  +GG DGV +C + +SAN   S
Sbjct: 477 STEAKTPARGGQDGVKTC-TISSANLFTS 504


>Z37092-6|CAE46667.1|  334|Caenorhabditis elegans Hypothetical
           protein F44F4.5b protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 15  FKTMLXSLQLHIS*CSLTLIHKFLWHSYSV 104
           + TM+ +L+LH S   +++ H  +W +Y+V
Sbjct: 257 YSTMVLTLRLHKSMIPISIYHNMVWWAYTV 286


>Z37092-5|CAA85456.1|  336|Caenorhabditis elegans Hypothetical
           protein F44F4.5a protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +3

Query: 15  FKTMLXSLQLHIS*CSLTLIHKFLWHSYSV 104
           + TM+ +L+LH S   +++ H  +W +Y+V
Sbjct: 259 YSTMVLTLRLHKSMIPISIYHNMVWWAYTV 288


>U40802-5|AAK19011.2|  339|Caenorhabditis elegans Hypothetical
           protein ZC477.5 protein.
          Length = 339

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -2

Query: 456 LIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPV 340
           L+ +G  +CP +  + L+K   V + H      PP QP+
Sbjct: 280 LLAYGRQNCPGVIEEILKKPVHVPNDHSTQQPQPPEQPI 318


>AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical
           protein Y17D7A.1 protein.
          Length = 414

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -2

Query: 516 ELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHDKTPSSPPLQPV 340
           E+V  E  L+   D L K   I    +  P      L+KLAE +   D    S P QPV
Sbjct: 127 EVVRCEKDLIDCTDLLRKAGRILKEGSESPLYTKSNLQKLAEALQKIDICHDSSPSQPV 185


>Z81577-1|CAB04651.3|  289|Caenorhabditis elegans Hypothetical
           protein R11.1 protein.
          Length = 289

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 468 GKWMLIYFGFTH-CPDICPD 412
           G W ++YFG  H C ++ PD
Sbjct: 169 GAWNMVYFGLYHSCREVIPD 188


>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 201  SAGPQDVDNDYIVDHTIIVYLVNP 130
            +AG  D D    + H I+VY+VNP
Sbjct: 2253 AAGSPDTDAYSTLPHVIVVYVVNP 2276


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 201  SAGPQDVDNDYIVDHTIIVYLVNP 130
            +AG  D D    + H I+VY+VNP
Sbjct: 2253 AAGSPDTDAYSTLPHVIVVYVVNP 2276


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 201  SAGPQDVDNDYIVDHTIIVYLVNP 130
            +AG  D D    + H I+VY+VNP
Sbjct: 2253 AAGSPDTDAYSTLPHVIVVYVVNP 2276


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,503,887
Number of Sequences: 27780
Number of extensions: 270169
Number of successful extensions: 772
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)