Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_K12
         (337 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    80   1e-16
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    24   7.1  
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    23   9.4  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    23   9.4  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    23   9.4  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    23   9.4  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 79.8 bits (188), Expect = 1e-16
 Identities = 43/92 (46%), Positives = 55/92 (59%)
 Frame = -3

Query: 278 VKCSELRTKDXXXXXXXXXXXXXXLTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYHQ 99
           +K  ELR +               L +LRV K+ GG  SKLSKI+  RK IAR+  V ++
Sbjct: 3   LKTFELRKQSQENLAEQLQELRQELASLRVQKIAGGSGSKLSKIKTTRKDIARILTVINE 62

Query: 98  KMKVKLRNHYKNKKYKPLDLRAKKTRAMRKAL 3
             ++  R  YKNKKY PLDLR KKTRA+R+AL
Sbjct: 63  SNRLAAREAYKNKKYIPLDLRQKKTRAIRRAL 94


>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +3

Query: 129 SFSYNTDLGQFRSNSTSNFSNPK 197
           +F+Y+ D G FR  + +NF +P+
Sbjct: 262 AFNYHFDNGVFRGLAFANFHSPE 284


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +3

Query: 105 IHNVNTCDSFSYNTDLGQFRSNSTSNFSNP 194
           + N NTCDS S++++   +  ++  +  NP
Sbjct: 454 LSNFNTCDSLSFSSNNSLYGYSTLLHPRNP 483


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 135 SYNTDLGQFRSNSTSNFS 188
           SYN+  G+F S+ST N S
Sbjct: 138 SYNSTHGEFYSDSTLNIS 155


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = +2

Query: 5   APCASHGSSWLLNLKACISCFCS 73
           AP   +   WL     CI C CS
Sbjct: 219 APFTFYWFKWLFLTGVCIGCVCS 241


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 119 HVR*LFLQHGSWTV*KQLHQ 178
           H R LFL+   WTV K L+Q
Sbjct: 397 HFRYLFLKTVFWTVRKNLYQ 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,122,134
Number of Sequences: 5004
Number of extensions: 16847
Number of successful extensions: 41
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)