Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_K11
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase |Schizos...    30   0.18 
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    27   1.3  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    25   8.9  

>SPAC23C11.13c |hpt1||xanthine phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 206

 Score = 30.3 bits (65), Expect = 0.18
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +2

Query: 437 QVQTKYKQIDSELLEKYIYTKCN 505
           +V+ K  Q+D E+L+KY +T CN
Sbjct: 154 KVKPKNAQLDKEILDKYYFTGCN 176


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 439 LHDTH*TSLVVTTEYEQSLRCCYNRFSLYMYVFD 338
           +H+T    L V + YEQS  CC N  S ++   D
Sbjct: 259 IHETGNNELPVASAYEQSKACC-NELSTFLSQID 291


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 500 ILCKYIFPIIHYRFVCTLFVLARYTL 423
           I+ K+I+P+ HY ++    VL  Y L
Sbjct: 142 IMPKWIYPLFHYFYIHIFQVLHLYLL 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,980,168
Number of Sequences: 5004
Number of extensions: 39492
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)