Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_K10
         (727 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0452 + 20931484-20933872,20933950-20934074                       30   1.6  
03_02_0193 + 6312518-6312554,6312948-6313091,6313214-6313368,631...    28   6.6  
09_06_0253 + 21871538-21871697,21871789-21872135                       28   8.7  

>06_03_0452 + 20931484-20933872,20933950-20934074
          Length = 837

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = -3

Query: 659 EELNAVFITNTEL*NIISVKNFVRGKLTSLVRLFQNEFENVEPLHL 522
           EEL  +F++N      I     +  KLT+ V+LFQN FE + P  L
Sbjct: 320 EELERLFLSNNHFTGSIPDSVALLPKLTN-VQLFQNSFEGILPQEL 364


>03_02_0193 +
           6312518-6312554,6312948-6313091,6313214-6313368,
           6313596-6313871,6313957-6314081,6314234-6314351,
           6314663-6314740,6318972-6319059,6319241-6319297,
           6319398-6319405
          Length = 361

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/37 (40%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = +1

Query: 499 MDLQSTVFK-CKGSTFSNSFWNNLTSDVN-FPRTKFL 603
           +D+Q  +F+ CKGST + S   N+++DV  F R K++
Sbjct: 308 VDIQVGIFRMCKGSTCTISLRLNISNDVEVFARGKYI 344


>09_06_0253 + 21871538-21871697,21871789-21872135
          Length = 168

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 404 YLPLNSSRHWFFICRN 451
           ++PLN SR ++FIC N
Sbjct: 90  FIPLNDSRRYYFICGN 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,648,859
Number of Sequences: 37544
Number of extensions: 218098
Number of successful extensions: 355
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 352
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)