Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_K10
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039711-1|AAB96712.1|  328|Caenorhabditis elegans Hypothetical ...    29   4.5  
U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine rec...    28   7.8  

>AF039711-1|AAB96712.1|  328|Caenorhabditis elegans Hypothetical
           protein F49D11.6 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -2

Query: 501 HSTVSKLYHFSLEVFPVFLQIKNQCLEEFNGKYKYLN 391
           HS++ +LYH  L +F +F+QI      +   KYK ++
Sbjct: 48  HSSIHQLYHTILCMFLIFVQIFKNFSNKTAPKYKLIS 84


>U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 6 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 321 SYLLNLLLVSKYIRFH*NGFQHSY 392
           S + N+L+  KYI+F+  GFQ +Y
Sbjct: 161 SIIWNILISDKYIQFYFGGFQPNY 184


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,608,282
Number of Sequences: 27780
Number of extensions: 254255
Number of successful extensions: 469
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)