Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_K05
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0182 + 1413551-1413794,1413883-1414139,1414241-1414387,141...    28   6.0  
12_02_0930 + 24508728-24508989,24509084-24509358,24510120-245103...    28   7.9  

>06_01_0182 +
           1413551-1413794,1413883-1414139,1414241-1414387,
           1414487-1414804
          Length = 321

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -3

Query: 483 ILLYPRVQLKKIVKQSEAKCM--LLKRNTTKWVDYLDHAVVK*A*TSVKECATVKYTRQF 310
           +L+   ++L  +V   + K    L  +   K+V+ LD  + K A   V++      ++Q 
Sbjct: 192 LLMNELLKLDAVVADGDVKAQRRLQVKRVQKYVETLDAVMAKNA-AIVRKSGEKLTSKQH 250

Query: 309 HHPPA 295
           HHPPA
Sbjct: 251 HHPPA 255


>12_02_0930 +
           24508728-24508989,24509084-24509358,24510120-24510396,
           24510631-24510707,24510827-24511123
          Length = 395

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 521 NIHLVI-TIEYLKEKYKNLRELRRLQIESSA 610
           ++HL+   IE+LK++ +  R LRR Q+E+ A
Sbjct: 81  SVHLIADVIEWLKDEVEKQRLLRRRQVEAPA 111


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,382,067
Number of Sequences: 37544
Number of extensions: 276698
Number of successful extensions: 641
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)