Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J24
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    28   1.2  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   2.7  
SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr...    27   3.5  

>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +1

Query: 238  NLRNLPIRSASRIQNIMVN 294
            N+RN+P RS+SR Q I +N
Sbjct: 1158 NIRNVPERSSSRFQGIRIN 1176


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 477 RPLVLSCQDNRERELVQLDS--FPGHKNCNL 563
           +P +LSC  N  +EL++L++  +   KNC L
Sbjct: 264 KPHLLSCLKNTHQELIKLETEVYNATKNCTL 294


>SPAC9E9.15 |||CIA30 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 252 QVAKIPFSKFVLGSKGRLQDKQTRMRFDKVTHFGI 148
           QV  IPFS+F    +GR  +    +   K+T F I
Sbjct: 127 QVVSIPFSEFKPTYRGRPVEGAPELDVSKITQFSI 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,524
Number of Sequences: 5004
Number of extensions: 59496
Number of successful extensions: 170
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)