Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_J24
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0569 + 30313337-30313650,30314271-30314353,30314763-303148... 62 3e-10
06_03_1312 - 29246828-29246899,29247011-29247058,29247138-292472... 38 0.008
02_01_0299 + 2001938-2002510,2002821-2003033,2003129-2003333,200... 38 0.011
02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,762... 35 0.056
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011... 29 2.8
04_04_0755 + 27812097-27812144,27812377-27812462,27812976-278130... 29 2.8
12_02_1109 + 26151421-26153601 28 8.5
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 28 8.5
03_04_0179 + 18161696-18163361,18163552-18163664 28 8.5
>01_06_0569 +
30313337-30313650,30314271-30314353,30314763-30314876,
30315876-30315938,30316289-30316380,30316464-30316544,
30316629-30316727,30316795-30316933,30317017-30317165
Length = 377
Score = 62.5 bits (145), Expect = 3e-10
Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 16/175 (9%)
Frame = -2
Query: 621 FNSPTVLEKFVTTCDSDHGEGYSSCALEMSPAGRA-------LFHGYLDTRVPKDG--RI 469
FNS L+++ DS++G G SS +LE++ G LF G L + + +I
Sbjct: 152 FNSKDELKRWHLYSDSEYG-GLSSASLEITDGGAGGDTSSTGLFSGNLSLDMSEGSTWKI 210
Query: 468 KKAGYCAMRSKMQRKSFKRASTFDWHLYNTLVLKVRGDGRAYLLNISTEGYY-------D 310
+++G+C MRSK K D Y+T+ +K+RGDGR Y+ I TE + D
Sbjct: 211 RRSGFCGMRSK------KFNGFIDLDAYDTIAMKLRGDGRCYISTIYTENWVNSPGQQED 264
Query: 309 ITWNDIYHYILYTRGGPYWQVAKIPFSKFVLGSKGRLQDKQTRMRFDKVTHFGIS 145
+W + Y+ R WQ+ KIP ++ +G + + + M +V +S
Sbjct: 265 NSW-QAFVYLPQDR----WQIMKIPLDSYLPTWRGNVIEAKMEMNPARVVGMSLS 314
>06_03_1312 -
29246828-29246899,29247011-29247058,29247138-29247215,
29247304-29247360,29247597-29247662,29247750-29247839,
29248136-29248213,29248318-29248422,29248534-29248669,
29248778-29248853,29248973-29249177,29249289-29249501,
29250073-29250795
Length = 648
Score = 37.9 bits (84), Expect = 0.008
Identities = 36/124 (29%), Positives = 61/124 (49%)
Frame = -2
Query: 594 FVTTCDSDHGEGYSSCALEMSPAGRALFHGYLDTRVPKDGRIKKAGYCAMRSKMQRKSFK 415
F T S EG + + + S AG+A+F G++ TR GY + ++ S
Sbjct: 353 FPNTFASRFDEGIDA-SFDFSEAGQAVFSGFVFTR---------GGYVEISKRL---SLP 399
Query: 414 RASTFDWHLYNTLVLKVRGDGRAYLLNISTEGYYDITWNDIYHYILYTRGGPYWQVAKIP 235
ST D Y+ L+ V G+GR+Y++ + T D + + Y + T+ G + +V ++P
Sbjct: 400 LGSTLD--RYDGLLFSVGGNGRSYVVILETGPLADTSQSKKYFARMTTKVG-FCRV-RVP 455
Query: 234 FSKF 223
FS F
Sbjct: 456 FSAF 459
>02_01_0299 +
2001938-2002510,2002821-2003033,2003129-2003333,
2003485-2003560,2003665-2003800,2003905-2004009,
2004095-2004172,2004264-2004353,2004441-2004506,
2004836-2004892,2004996-2005073,2005165-2005212,
2005330-2005401
Length = 598
Score = 37.5 bits (83), Expect = 0.011
Identities = 32/111 (28%), Positives = 57/111 (51%)
Frame = -2
Query: 555 SSCALEMSPAGRALFHGYLDTRVPKDGRIKKAGYCAMRSKMQRKSFKRASTFDWHLYNTL 376
+ + E+S G+A+F G++ TR GY + ++ S ST D Y+ L
Sbjct: 315 TDASFEISENGQAVFSGFVFTR---------GGYVEVSKRL---SLPLGSTLD--RYDGL 360
Query: 375 VLKVRGDGRAYLLNISTEGYYDITWNDIYHYILYTRGGPYWQVAKIPFSKF 223
+L V G+GR+Y++ + T D + + Y + T+ G + +V ++PFS F
Sbjct: 361 LLSVGGNGRSYVIILETGPLADTSQSKKYFARMNTKVG-FCRV-RVPFSDF 409
>02_02_0188 + 7617838-7620231,7621856-7622071,7622167-7622328,
7622466-7622516,7622936-7623070,7623161-7623184,
7623341-7623452,7623776-7623901,7624004-7624053,
7624339-7624497,7624582-7624677,7624751-7624866,
7624907-7624984,7624985-7625108,7625193-7625306,
7625423-7625503,7625616-7625756,7625834-7625848
Length = 1397
Score = 35.1 bits (77), Expect = 0.056
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = -2
Query: 399 DWHLYNTLVLKVRGDGRAYLLNISTEGYYDITWNDIYHYILYTRGGPYWQVAKIPFS 229
D Y+ + L+V+GDGR Y L + T W+ + + + WQ K+PFS
Sbjct: 1097 DLSAYDGIELRVKGDGRRYKLIVRT----SFEWDTVGYIASFDTTKGEWQSVKLPFS 1149
>06_03_1490 +
30497980-30498102,30499034-30500156,30500914-30501132,
30501228-30501454,30501810-30501884,30502250-30502321,
30502765-30502863,30502975-30503046,30503131-30503245,
30503455-30503523,30503625-30503952,30504320-30504437,
30504522-30505448
Length = 1188
Score = 29.5 bits (63), Expect = 2.8
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 480 DGRIKKAGYCAMRSKMQRKSFKRASTFDWHLYNTLVLKVRGDG 352
D R KK G A + M +F+ +YN +V +GDG
Sbjct: 622 DERCKKVGDVASKLSMDEATFREIQEKKLEIYNAIVKLQKGDG 664
>04_04_0755 +
27812097-27812144,27812377-27812462,27812976-27813037,
27813256-27813374,27813511-27813678,27813766-27813798
Length = 171
Score = 29.5 bits (63), Expect = 2.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 294 IYHYILYTRGGPYWQVAKIPFSKFVLGSKGRLQDK 190
+Y Y+ +GG + K FSKF++ +GR+ D+
Sbjct: 116 LYKYLKSNKGGLFGDSIKWNFSKFLVDKEGRVVDR 150
>12_02_1109 + 26151421-26153601
Length = 726
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/32 (37%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Frame = +2
Query: 329 EMLSK*ALPSPLTFKTKVLYRCQ-SNVDALLN 421
+ML++ LP+P+T++T + C+ N++ LLN
Sbjct: 573 KMLNRGVLPTPVTYRTVIHRYCEKGNLEDLLN 604
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 218 KTNFENGIFATCQYGPPLVYRI*W*ISFQ 304
++++++G FATCQ G L + + W I Q
Sbjct: 303 RSDYQSGHFATCQVGLVLYWIVYWDIQLQ 331
>03_04_0179 + 18161696-18163361,18163552-18163664
Length = 592
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 456 YCAMRS-KMQRKSFKRASTFDWHLYNTLVLKVRGDGR 349
YC + S K +K F R S D L+NT+++ + +GR
Sbjct: 384 YCKLASLKHAKKIFSRVSFKDLVLWNTMIIGLSHNGR 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,992,723
Number of Sequences: 37544
Number of extensions: 367179
Number of successful extensions: 932
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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