Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J24
         (718 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF151823-1|AAD34060.1|  327|Homo sapiens CGI-65 protein protein.      179   8e-45
BC000780-1|AAH00780.1|  327|Homo sapiens NADH dehydrogenase (ubi...   177   3e-44

>AF151823-1|AAD34060.1|  327|Homo sapiens CGI-65 protein protein.
          Length = 327

 Score =  179 bits (436), Expect = 8e-45
 Identities = 83/195 (42%), Positives = 122/195 (62%), Gaps = 1/195 (0%)
 Frame = -2

Query: 633 LLWCFNSPTVLEKFVTTCDSDHGEGYSSCALEMSPAGR-ALFHGYLDTRVPKDGRIKKAG 457
           ++W F     L+K+  T D   G G S   L+M    + AL +G L +  P+DG   ++G
Sbjct: 123 VVWQFRGKEDLDKWTVTSDKTIG-GRSEVFLKMGKNNQSALLYGTLSSEAPQDGESSRSG 181

Query: 456 YCAMRSKMQRKSFKRASTFDWHLYNTLVLKVRGDGRAYLLNISTEGYYDITWNDIYHYIL 277
           YCAM S++ R +FKR  ++DW  +NTL L+VRGDGR +++NI  +  +    N +Y Y +
Sbjct: 182 YCAMISRIPRGAFKRKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFM 241

Query: 276 YTRGGPYWQVAKIPFSKFVLGSKGRLQDKQTRMRFDKVTHFGISCGDKIVGKFXLEIEYV 97
           +TRGGPYWQ  KIPFSKF   ++GR++D Q  +  DK++  G +  DK+ G F LEI+++
Sbjct: 242 FTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFI 301

Query: 96  GLEFDPTHDEEFADE 52
           G+  DP H EEFA E
Sbjct: 302 GVFTDPAHTEEFAYE 316


>BC000780-1|AAH00780.1|  327|Homo sapiens NADH dehydrogenase
           (ubiquinone) 1 alpha subcomplex, assembly factor 1
           protein.
          Length = 327

 Score =  177 bits (431), Expect = 3e-44
 Identities = 82/195 (42%), Positives = 122/195 (62%), Gaps = 1/195 (0%)
 Frame = -2

Query: 633 LLWCFNSPTVLEKFVTTCDSDHGEGYSSCALEMSPAGR-ALFHGYLDTRVPKDGRIKKAG 457
           ++W F     L+K+  T D   G G S   L+M    + AL +G L +  P+DG   ++G
Sbjct: 123 VVWQFRGKEDLDKWTVTSDKTIG-GRSEVFLKMGKNNQSALLYGTLSSEAPQDGESTRSG 181

Query: 456 YCAMRSKMQRKSFKRASTFDWHLYNTLVLKVRGDGRAYLLNISTEGYYDITWNDIYHYIL 277
           YCAM S++ R +F+R  ++DW  +NTL L+VRGDGR +++NI  +  +    N +Y Y +
Sbjct: 182 YCAMISRIPRGAFERKMSYDWSQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFM 241

Query: 276 YTRGGPYWQVAKIPFSKFVLGSKGRLQDKQTRMRFDKVTHFGISCGDKIVGKFXLEIEYV 97
           +TRGGPYWQ  KIPFSKF   ++GR++D Q  +  DK++  G +  DK+ G F LEI+++
Sbjct: 242 FTRGGPYWQEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDFI 301

Query: 96  GLEFDPTHDEEFADE 52
           G+  DP H EEFA E
Sbjct: 302 GVFTDPAHTEEFAYE 316


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,905,511
Number of Sequences: 237096
Number of extensions: 2096344
Number of successful extensions: 8456
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8456
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8399192100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)