Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J24
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              28   0.10 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   2.9  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    23   3.8  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.0  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.8  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 138 LRKIYRSELLCRNAFSFV-CLANGLLIPKRTSRMESSQLANTVRLSYTEY 284
           +R+ +  E L      F+ C+A+G   P+ T  ++  +L+NT RL   +Y
Sbjct: 396 IRQAFAEETLQPGPSMFLKCVASGNPTPEITWELDGKRLSNTERLQVGQY 445


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 95  PTYSISXLNLPTILSPQDIPK*VTLSKRILVCL 193
           P   IS L + T   P D  + VTLS  IL+ L
Sbjct: 254 PCMGISFLTVLTFYLPSDSGEKVTLSISILISL 286


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 95  PTYSISXLNLPTILSPQDIPK*VTLSKRILVCL 193
           P   IS L + T   P D  + VTLS  IL+ L
Sbjct: 254 PCMGISFLTVLTFYLPSDSGEKVTLSISILISL 286


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 21  QQQCLSPFCPFRRQILHRVLDRILNLRT 104
           ++Q  S F P  R+I  R++D  + +RT
Sbjct: 78  RRQPFSLFIPAHRKIAARLIDIFMGMRT 105


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 513 FHGYLDTRVPKDGRIKKAG 457
           F   LDT VP  G + KAG
Sbjct: 15  FSATLDTVVPNSGELFKAG 33


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -1

Query: 181 NAFRQSNSLRYILRRQDSW 125
           NAFR +N+L++++   + W
Sbjct: 275 NAFRGNNNLKWLVNWGEQW 293


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 490 SRVKITVKESSSSWTHFQ 543
           SR+K T K S+   THFQ
Sbjct: 675 SRIKTTEKLSTDPNTHFQ 692


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 496 HESTKGRSHQKSRVLRYEIENAKE 425
           H+S   R H K+   R E+E  +E
Sbjct: 51  HKSIYHRQHSKNEQQRKEMEQMRE 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,945
Number of Sequences: 438
Number of extensions: 4588
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)