Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_J19
(345 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50006-6|CAA90298.1| 334|Caenorhabditis elegans Hypothetical pr... 29 0.68
AC199172-10|ABO33271.1| 302|Caenorhabditis elegans F-box a prot... 28 1.6
U53154-8|AAC25846.1| 328|Caenorhabditis elegans Hypothetical pr... 28 2.1
AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear recep... 27 2.7
AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormo... 27 2.7
AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormo... 27 2.7
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 27 4.8
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 27 4.8
AF000196-4|AAC24254.2| 429|Caenorhabditis elegans Hypothetical ... 27 4.8
>Z50006-6|CAA90298.1| 334|Caenorhabditis elegans Hypothetical
protein T07C5.5 protein.
Length = 334
Score = 29.5 bits (63), Expect = 0.68
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 72 LDHVTAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLAC 203
+D +T C +C KTT F Y C + +R VL C
Sbjct: 1 MDCITRSCKVCNEKTTGFNYGVQSCNACKMFFRRALDTPKVLKC 44
>AC199172-10|ABO33271.1| 302|Caenorhabditis elegans F-box a protein
protein 37 protein.
Length = 302
Score = 28.3 bits (60), Expect = 1.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +3
Query: 90 HCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLTFFFHRIYSFSK 242
H +IC+ + Y DS NC ++++ A++ V C+ FF+ + F K
Sbjct: 60 HVSICVDRIETNYYYDDDSSNC--FNRKQKAVEGV-DCMNAFFNDLKLFLK 107
>U53154-8|AAC25846.1| 328|Caenorhabditis elegans Hypothetical
protein C33G8.5 protein.
Length = 328
Score = 27.9 bits (59), Expect = 2.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 201 CLTFFFHRIYSFSKGQSEHFAIN*FARNNYFSILSILH 314
C FFF +SF G S HF + +R YF+++ ++H
Sbjct: 247 CFVFFF---FSFI-GTSLHFNSSKMSRPTYFALVEVIH 280
>AY204179-1|AAO39183.1| 486|Caenorhabditis elegans nuclear receptor
NHR-80 protein.
Length = 486
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +3
Query: 84 TAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLT 209
+ C IC + T F ++ C + +R A+ C+T
Sbjct: 9 STRCLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCIT 50
>AF078783-3|AAN63404.1| 504|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform b protein.
Length = 504
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +3
Query: 84 TAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLT 209
+ C IC + T F ++ C + +R A+ C+T
Sbjct: 27 STRCLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCIT 68
>AF078783-2|AAK82901.1| 486|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 80, isoform a protein.
Length = 486
Score = 27.5 bits (58), Expect = 2.7
Identities = 10/42 (23%), Positives = 18/42 (42%)
Frame = +3
Query: 84 TAHCTICLLKTTMFQYQGSDSYNCTHYSKRYYAIDSVLACLT 209
+ C IC + T F ++ C + +R A+ C+T
Sbjct: 9 STRCLICSAQATGFHFEAQSCSACAAFFRRTVALTKSFKCIT 50
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 263 RKMFRLPFGERVDPMEEKRQARENTINSVITFGIMCAIIRIAPL--VLEHGS 114
R FRL + +E++++A NT++ + + CAI+RI VL+H +
Sbjct: 694 RMKFRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTRKVLKHNA 745
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 263 RKMFRLPFGERVDPMEEKRQARENTINSVITFGIMCAIIRIAPL--VLEHGS 114
R FRL + +E++++A NT++ + + CAI+RI VL+H +
Sbjct: 677 RMKFRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTRKVLKHNA 728
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = -2
Query: 263 RKMFRLPFGERVDPMEEKRQARENTINSVITFGIMCAIIRIAPL--VLEHGS 114
R FRL + +E++++A NT++ + + CAI+RI VL+H +
Sbjct: 753 RMKFRLQAPQVNKAVEKEQEAVANTVSQDRKYYMECAIVRIMKTRKVLKHNA 804
>AF000196-4|AAC24254.2| 429|Caenorhabditis elegans Hypothetical
protein B0041.5 protein.
Length = 429
Score = 26.6 bits (56), Expect = 4.8
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +1
Query: 4 SI*HLNCFSSSCCFFVGTHSCGILIMSLHTALSAY*KLPCSSTKGAILIIAHIIPNVITL 183
S+ LN SSS FV + I S + SAY L + +LI++H IP+ +
Sbjct: 195 SVSSLNLVSSSSSVFVLAFA--ICFPSTNNRFSAYKCLLVAINIAGVLIVSHYIPSFLGA 252
Query: 184 L 186
L
Sbjct: 253 L 253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,350,151
Number of Sequences: 27780
Number of extensions: 134804
Number of successful extensions: 343
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 451081596
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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