Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_J18
(581 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0998 - 8414492-8415175 34 0.095
05_03_0245 + 10890555-10890962 31 0.89
05_03_0244 + 10857139-10857516 31 0.89
12_02_0223 + 15868889-15869182 30 1.5
04_03_0941 - 20950190-20951088,20952436-20952478,20952580-209526... 30 1.5
01_06_0801 - 32085110-32085274,32086318-32086365,32086441-320864... 29 2.7
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 2.7
04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743 29 3.6
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 27 8.2
>07_01_0998 - 8414492-8415175
Length = 227
Score = 33.9 bits (74), Expect = 0.095
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +1
Query: 184 CCSRCCTGCSQLRK-CCNRCCTGC 252
CC C GC + CC+RCC GC
Sbjct: 2 CCCCCECGCYECYDACCDRCCCGC 25
>05_03_0245 + 10890555-10890962
Length = 135
Score = 30.7 bits (66), Expect = 0.89
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +1
Query: 145 CNRCCRECSQLRKCCSRCCTGCSQLRKCCNRCCTGCS 255
C C + C R CC C R C C CS
Sbjct: 87 CGGCNKACKHGRSCCGGRCVDLLSDRDNCGSCSNQCS 123
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 142 CCNRCCRECSQLRKCCSRCCTGCSQLRKCC-NRCCTGCSQLRRC 270
CC C + + C C C R CC RC S C
Sbjct: 72 CCGGRCVDTGASGEHCGGCNKACKHGRSCCGGRCVDLLSDRDNC 115
>05_03_0244 + 10857139-10857516
Length = 125
Score = 30.7 bits (66), Expect = 0.89
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +1
Query: 145 CNRCCRECSQLRKCCSRCCTGCSQLRKCCNRCCTGCS 255
C C + C R CC C R C C CS
Sbjct: 78 CGGCNKACKHGRSCCGGRCVDLLSDRDNCGSCSNQCS 114
Score = 27.5 bits (58), Expect = 8.2
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Frame = +1
Query: 142 CCNRCCRECSQLRKCCSRCCTGCSQLRKCC-NRCCTGCSQLRRC 270
CC C + + C C C R CC RC S C
Sbjct: 63 CCGGRCVDTGASGEHCGGCNKACKHGRSCCGGRCVDLLSDRDNC 106
>12_02_0223 + 15868889-15869182
Length = 97
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 6/43 (13%)
Frame = +1
Query: 145 CNRCCRECSQLRKCCSRCCTGCSQ------LRKCCNRCCTGCS 255
CN C + K C+ C GCS L+ C TGCS
Sbjct: 47 CNASCVNSDTIAKLCAPQCDGCSPEACQSCLQALKQECLTGCS 89
>04_03_0941 -
20950190-20951088,20952436-20952478,20952580-20952606,
20953189-20953301,20953872-20954715,20955740-20955790,
20956026-20956126,20956205-20956244,20956360-20957124
Length = 960
Score = 29.9 bits (64), Expect = 1.5
Identities = 11/36 (30%), Positives = 14/36 (38%)
Frame = +1
Query: 157 CRECSQLRKCCSRCCTGCSQLRKCCNRCCTGCSQLR 264
C C +R CCS C ++ CC LR
Sbjct: 54 CTMCGSVRYCCSDCLISDCEVHSSSGECCFFVKHLR 89
>01_06_0801 -
32085110-32085274,32086318-32086365,32086441-32086483,
32086588-32086651,32086740-32086792,32086899-32086937,
32087031-32087113,32087200-32087280
Length = 191
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = +1
Query: 157 CRECSQ--LRKCCSRCCTGCSQLRKCCNRCCT 246
C++C + +R+ CT CS+ C +CCT
Sbjct: 68 CQKCGKRNVRQAYHNVCTACSKDLGICAKCCT 99
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 154 CCRECSQLRKCCSRCCTGCSQLRKCCNRCCTGCSQL 261
C R+C +LR C C R+CC C C ++
Sbjct: 412 CERKCQRLRNCGRHACR-----RRCCEGDCAPCPEV 442
>04_04_0163 - 23217212-23217396,23217503-23217569,23217678-23217743
Length = 105
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Frame = +1
Query: 139 GCCNRCCRECSQLRKC---CSRCCTGCSQL-------RKCCNRCCT 246
G C+ C E S ++C C CC+ C + R+ C RC T
Sbjct: 48 GACDARCSEHSHKKRCSRSCLTCCSACRCVPAGTAGNRETCGRCYT 93
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +1
Query: 145 CNRCCRECSQLRKCCSRCCTGCSQLRKCCN 234
C RC R + CS C Q R+C N
Sbjct: 3454 CPRCSRSVTDKHGICSNCHENAYQCRQCRN 3483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,396,695
Number of Sequences: 37544
Number of extensions: 107480
Number of successful extensions: 354
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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