Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J17
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.02c |||peroxisomal membrane protein Pex22 |Schizosaccha...    27   3.6  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    26   4.8  
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    26   6.3  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   8.4  

>SPAC19D5.02c |||peroxisomal membrane protein Pex22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 241 FQKSNMYLTT*LFSIILAG*SINQDIA 321
           FQK  +YL   LF II++G + NQ  A
Sbjct: 193 FQKYGLYLIPILFLIIMSGNNANQQAA 219


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
 Frame = -3

Query: 467 FEVVVNDKLIYS--KLKTMALP-DYGE-VAQVVHDVSKGQEPREIKGEQPIN 324
           FEVV N+ +I +  K +T+  P  Y + V ++ HD  + ++   +KG  PIN
Sbjct: 60  FEVVNNENIITTTPKHQTVITPKSYRKSVKRIKHDAPQNEDIPVMKGLAPIN 111


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 42/156 (26%), Positives = 61/156 (39%), Gaps = 5/156 (3%)
 Frame = -3

Query: 494 LCKRGRQGSFEVVVNDKLIYSKLKTMALPDYGEVAQVVHDVSKGQEPREIKGEQPINCAI 315
           L K+ R G F   +ND  + S LK   L +   V+  V         ++I    P + AI
Sbjct: 182 LPKQRRTGLFSATMNDT-VSSFLKIAGLRNSVRVSVTVTS-------KKIDTRTPSSLAI 233

Query: 314 S*LMLQPASIIENSHVVKYMFDFWKCDTI--DCTVCSYFIRLTAAHKLPEYWADLYGQFV 141
             L++ P   ++    +    ++ K       C    YF  L   +KLP     L+GQ  
Sbjct: 234 QSLVIPPIYKVQCMIHLLCTIEYEKAIVFFSSCASVEYFNSLFLTYKLPFEIVALHGQ-- 291

Query: 140 LAPTT*GPRRPVHENKTRRCSKHKK-NKK--LFAQD 42
                      V  N++R   K KK NKK  LF  D
Sbjct: 292 ----------QVQSNRSRNFEKFKKSNKKTVLFTTD 317


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = +3

Query: 447 IIHNYFKRPLTSPFTQNQSRRCIISNNLRQG*AMTSIITSTTVFYMYFRDETFFFIPS 620
           ++H + +  L  PF     R  I+ NN R+   +T +++   ++ ++F    F+ + S
Sbjct: 322 VVHFFIRDSLEVPFIWQHRRDYIVHNN-RERNTITPLLSQNDLWNIFFLCTKFWSLHS 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,881,695
Number of Sequences: 5004
Number of extensions: 59288
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)