Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J15
         (731 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    27   2.8  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.6  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    27   3.6  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   4.8  
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    26   4.8  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    25   8.4  

>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 433 VHQWQKRKWSVGQFPHPPLDFARARHVTGLVRKISSRSPRSYTPDF 570
           ++   K  WS  +  H  +   + + VT LV + SS SP+    DF
Sbjct: 844 IYTIDKLVWSAAKQVHHIVSDGKYKFVTSLVEQNSSASPKKNYDDF 889


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 574 IKNQEYNSLEICSIS-FLLDQSRVGPLRNLRAGEGTGRLTISFSAIDEQVIATAGQRDVR 398
           + NQ Y+ +   +   F L++  VG  +NLR G G+G   ++   I++Q I   G   +R
Sbjct: 169 LTNQAYHGIGYQADDVFQLERKPVGMAKNLRGGFGSG--VLNDDGIEDQDIYDLGAPKMR 226


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 724 SYHY*IX*GFVDPSLPSLXXNKGILIR 644
           +YHY +    +DPSLP    NK + I+
Sbjct: 252 TYHYPLYTAELDPSLPEFDYNKDMAIK 278


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = -3

Query: 729 DIPIIIRLXKVLSILRYLRYXXIKGY*FVKLILIKVDKNLCTV 601
           D+PI++ L KV  ++  LR      Y  ++ ++ +V+ N+C +
Sbjct: 261 DMPIVLVLNKVDRLILELRLPPNDAYHKLRHVIDEVNDNICQI 303


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = -2

Query: 580 YSIKNQEYNSLEICSISFLLDQSRVGPLRNLRAGEGTGRLTISFSAIDEQVIATAGQRDV 401
           +   ++ Y+ + I  +   +D+   G  R L   EG+G+L ++     +   + AG++DV
Sbjct: 465 FDATSKSYSDIGIGPLKINVDRD-TGSARILARVEGSGKLLLNVRLCQDFEYSLAGKKDV 523

Query: 400 R 398
           +
Sbjct: 524 K 524


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +1

Query: 502 ARHVTGLVRKISSRSPRS 555
           A+H+TG++RKI  R  RS
Sbjct: 15  AKHLTGVLRKIGRRGGRS 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,039
Number of Sequences: 5004
Number of extensions: 49060
Number of successful extensions: 102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)