Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J14
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.7  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 683 LPHPSSTPLSLRV*KASNMSRTTSPTGEQVNTKSLSSITFKL 558
           LPH    PLS +   +S+     SP   QV+  + S +   L
Sbjct: 435 LPHDDQPPLSPQSDSSSSSRSAESPMSVQVDPMAASVVAAAL 476


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 666 DPLKPKSLKGIEYEPDN 616
           D  KP++ KGI  EP N
Sbjct: 550 DSTKPETSKGINAEPSN 566


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 345 TIFNID*IIAIRSITPYCNIKYTSYLANDMDQNQII 452
           T+FN +   A RS  P+   + +  +A  MD+N ++
Sbjct: 285 TLFNENSEAAARSFVPFSIERSSQSVAEVMDRNGVL 320


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 249  CDMNSFKTMQILLRSTLIVNKLIKPHEPLFMYSLSV 142
            CD++S K +++ LRS+L  ++    + P   YS++V
Sbjct: 1889 CDIDSLKKLKLGLRSSL-WSRPSTQNNPSSDYSIAV 1923


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 249  CDMNSFKTMQILLRSTLIVNKLIKPHEPLFMYSLSV 142
            CD++S K +++ LRS+L  ++    + P   YS++V
Sbjct: 1885 CDIDSLKKLKLGLRSSL-WSRPSTQNNPSSDYSIAV 1919


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 605  QWGLLSGSYSMPFRLLGLRGSM 670
            Q+G   G Y  P+   G RGS+
Sbjct: 1819 QYGSQYGQYGAPYDHYGSRGSV 1840


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,204
Number of Sequences: 438
Number of extensions: 3799
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)