Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_J12
(765 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 171 7e-44
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 56 4e-09
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 42 1e-04
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 39 9e-04
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.24
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb... 29 0.55
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 28 1.7
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 27 2.2
SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces... 27 3.9
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 26 5.1
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 9.0
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 25 9.0
SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces... 25 9.0
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 171 bits (417), Expect = 7e-44
Identities = 85/165 (51%), Positives = 118/165 (71%), Gaps = 3/165 (1%)
Frame = -2
Query: 764 RLXRLASGVAVLHVGGSSEVEVNEXKDRVNDALNATRAAVEEGIVPGGGSALLRCIPVLE 585
RL +L+ G+AV+ VGGSSEVEVNE KDR+ DALNA +AAV EG++PG G++ ++ L
Sbjct: 400 RLAKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVLPGAGTSFVKASLRLG 459
Query: 584 QLKTVNSDQATGVEIVMKALRMPCMTIAKNAGIDGSVVVAKVEDL-GDEF--GYDALNNE 414
+ T N DQ GVEIV KA+ P TI +NAG++G+++V K+++L G EF GYD +
Sbjct: 460 DIPTNNFDQKLGVEIVRKAITRPAQTILENAGLEGNLIVGKLKELYGKEFNIGYDIAKDR 519
Query: 413 YVNMIEKGIIDPTKVVRTALTDASGVASLLTTAEAVICEIPQEKE 279
+V++ E G++DP KVVRT L DASGVASL+ T E I + P+E +
Sbjct: 520 FVDLNEIGVLDPLKVVRTGLVDASGVASLMGTTECAIVDAPEESK 564
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 56.4 bits (130), Expect = 4e-09
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 6/153 (3%)
Frame = -2
Query: 719 GSSEVEVNEXKDRVNDALNATRAAVEEGIVP-GGGSALLRCIPVLEQLKTVN-SDQATGV 546
G++ ++E + ++DAL V E V GGG A + +E+ T +A V
Sbjct: 373 GATHQLLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAV 432
Query: 545 EIVMKALRMPCMTIAKNAGIDGSVVVAKVE----DLGDEFGYDALNNEYVNMIEKGIIDP 378
KAL +A NAG D S +VA+++ D D G D E +M KGI++
Sbjct: 433 SAFAKALSQLPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEGEIADMRAKGILEA 492
Query: 377 TKVVRTALTDASGVASLLTTAEAVICEIPQEKE 279
K+ + ++ S A LL + ++ P+ +E
Sbjct: 493 LKLKQAVVSSGSEGAQLLLRVDTILKAAPRPRE 525
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 41.5 bits (93), Expect = 1e-04
Identities = 33/156 (21%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
Frame = -2
Query: 719 GSSEVEVNEXKDRVNDALNATRAAVEEGI-VPGGGSALLRCIPVLEQLK-TVNSDQATGV 546
G ++ + E + ++DA+ + A++ + V GGG+ + L T++ Q +
Sbjct: 381 GGADQFIAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFI 440
Query: 545 EIVMKALRMPCMTIAKNAGIDGSVVVAKV---EDLGDEF-GYDALNNEYVNMIEKGIIDP 378
++L + + NAG D + ++ K+ G+ + G D + N EK + +P
Sbjct: 441 AAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSEGVANNFEKFVWEP 500
Query: 377 TKVVRTALTDASGVASLLTTAEAVICEIPQEKEPNP 270
+ V A+ A+ A+L+ + + I P ++ P
Sbjct: 501 STVKSNAILSATEAATLILSVDETIKNEPSQQPQAP 536
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 38.7 bits (86), Expect = 9e-04
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Frame = -2
Query: 746 SGVAVLHVGGSSEVEVNEXKDRVNDALNATRAAVEEG-IVPGGGSALLRC-IPVLEQLKT 573
S + V GS+++ V+E K ++DAL R + + +V GGG+A + C + V ++ +
Sbjct: 382 SRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEK 441
Query: 572 VNSDQATGVEIVMKALRMPCMTIAKNAGIDG-----SVVVAKVEDLGDEFGYDALNNEYV 408
+ + AL + +A+N+G+ +V V++ G D L
Sbjct: 442 IPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSN 501
Query: 407 NMIEKGIIDP 378
+M ++ +IDP
Sbjct: 502 DMRKQFVIDP 511
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 30.7 bits (66), Expect = 0.24
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +1
Query: 307 TASAVVS--SDATPLASVRAVRTTFVGSMMPFSIMF-TYSLLRASYPNSSPRSSTLATT 474
T+S++ S S +TPL S + S S + T SLL +S P+S+P SS +TT
Sbjct: 241 TSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNTSSLLPSSTPSSTPLSSANSTT 299
>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 420
Score = 29.5 bits (63), Expect = 0.55
Identities = 18/65 (27%), Positives = 33/65 (50%)
Frame = +1
Query: 319 VVSSDATPLASVRAVRTTFVGSMMPFSIMFTYSLLRASYPNSSPRSSTLATTTEPSMPAF 498
++SS LA V + +TF+ ++P S+ + +S AS NSSP ++ + +
Sbjct: 343 LLSSLEMVLAFVGSTGSTFISFILPGSLYYFFSHKVASPGNSSPLQLRISRAFAAGLAIY 402
Query: 499 FAIVM 513
+VM
Sbjct: 403 GTVVM 407
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 6 TLFALTAGKLSSLNHSHKPACLLCSNIHXTKSFHSLHFQF 125
TLFA A +L++L S K C+N+ + H+ F +
Sbjct: 856 TLFATHAHQLTNLTKSFKNVECYCTNLSIDRDDHTFSFDY 895
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +2
Query: 20 NCRQTLITQSFSQASLPSLLKHP-LNKILSFTAFSI--QFSPLNNSKYPFTFVTICIHKC 190
NC + + S +LP + +H + IL F+I QF+P S+ + + +C+ K
Sbjct: 253 NCDHKHNSVTLSDFALPDIDQHDTVETILEKVEFTIPKQFTPAILSQGTSSLLKLCLRKY 312
Query: 191 IQXVHFMKIT 220
+ V+F I+
Sbjct: 313 LSVVNFKCIS 322
>SPAC513.02 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 26.6 bits (56), Expect = 3.9
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Frame = +1
Query: 418 LLRASYPNSSPRSSTLATTTEPSMPAFFAIVMHGI-LRAFITISTP 552
+ +A Y S RS LA FA+V HG+ +R F I P
Sbjct: 134 IYKADYKTSIQRSRVLAEFFAKVPEKVFAVVTHGVDIRLFQKIQKP 179
>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 642
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +2
Query: 152 YPFTFVTICIHKCIQXVHF 208
+ F ++T CIH I VHF
Sbjct: 293 FTFKYITTCIHANIDIVHF 311
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 9.0
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Frame = +2
Query: 8 TVRSNCRQTLIT---QSFSQASL--PSLLKHPLNKILSFTAFSIQFSPLNNSKYPFTFVT 172
T S R +I+ FSQ + PSL P+ IL+ S+Q + K F+
Sbjct: 514 TSHSKLRDAIISTLNDVFSQTIIFCPSLAVPPILTILA----SLQHTSPTQHKAVLEFLN 569
Query: 173 ICIHKCIQXV 202
CI++CI V
Sbjct: 570 SCINRCISRV 579
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.4 bits (53), Expect = 9.0
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 746 SGVAVLHVGGSSEVEVNEXKDRVNDALNATRAAVEEGIVPGGGSALLRCIPVLEQLKTVN 567
SG+ LH+ SS + + D + RAA I GS + + +P L +N
Sbjct: 411 SGITSLHLHASSNTNADNIIRALGDVAGSARAAGLREIAAASGSPMPK-LPSDSALHRLN 469
Query: 566 -SDQATGV 546
+ A GV
Sbjct: 470 AASDAAGV 477
>SPAC1F5.03c |||FAD-dependent oxidoreductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 382
Score = 25.4 bits (53), Expect = 9.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +3
Query: 420 VEGIIPKFISKVFHLGNNNRTINACIFCYCHAWHPQS 530
+E I P + V LGN + + +CHA + ++
Sbjct: 115 IEWIAPSIVENVTRLGNKKNSGQVHPYKFCHAIYEEA 151
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,810,171
Number of Sequences: 5004
Number of extensions: 54539
Number of successful extensions: 188
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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