Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P10_pT_J09
(419 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L38941-1|AAC41916.1| 117|Homo sapiens ribosomal protein L34 pro... 130 2e-30
CR542242-1|CAG47038.1| 117|Homo sapiens RPL34 protein. 126 4e-29
CR542232-1|CAG47028.1| 117|Homo sapiens RPL34 protein. 126 4e-29
BC106009-1|AAI06010.1| 117|Homo sapiens ribosomal protein L34 p... 126 4e-29
BC070208-1|AAH70208.1| 117|Homo sapiens ribosomal protein L34 p... 126 4e-29
BC001773-1|AAH01773.1| 117|Homo sapiens ribosomal protein L34 p... 126 4e-29
AB061832-1|BAB79470.1| 117|Homo sapiens ribosomal protein L34 p... 126 4e-29
AB007181-1|BAA25840.1| 45|Homo sapiens ribosomal protein L34 p... 60 3e-09
BC037582-1|AAH37582.1| 349|Homo sapiens ATXN7L2 protein protein. 29 6.3
BC036849-1|AAH36849.1| 580|Homo sapiens ataxin 7-like 2 protein. 29 6.3
AL355145-2|CAI22938.1| 349|Homo sapiens ataxin 7-like 2 protein. 29 6.3
AL355145-1|CAI22937.1| 722|Homo sapiens ataxin 7-like 2 protein. 29 6.3
>L38941-1|AAC41916.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 130 bits (314), Expect = 2e-30
Identities = 63/101 (62%), Positives = 72/101 (71%), Gaps = 2/101 (1%)
Frame = -1
Query: 371 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 198
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C KLRG++P R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGKLRGVRPVR 60
Query: 197 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 75
P RL KK V R YGG +C KCV+ RI RAFLIEEQK
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK 101
>CR542242-1|CAG47038.1| 117|Homo sapiens RPL34 protein.
Length = 117
Score = 126 bits (303), Expect = 4e-29
Identities = 61/101 (60%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
Frame = -1
Query: 371 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 198
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 197 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 75
P RL KK V R YGG +C KCV+ RI RAFLIEEQK
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK 101
>CR542232-1|CAG47028.1| 117|Homo sapiens RPL34 protein.
Length = 117
Score = 126 bits (303), Expect = 4e-29
Identities = 61/101 (60%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
Frame = -1
Query: 371 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 198
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 197 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 75
P RL KK V R YGG +C KCV+ RI RAFLIEEQK
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK 101
>BC106009-1|AAI06010.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 126 bits (303), Expect = 4e-29
Identities = 61/101 (60%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
Frame = -1
Query: 371 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 198
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 197 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 75
P RL KK V R YGG +C KCV+ RI RAFLIEEQK
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK 101
>BC070208-1|AAH70208.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 126 bits (303), Expect = 4e-29
Identities = 61/101 (60%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
Frame = -1
Query: 371 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 198
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 197 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 75
P RL KK V R YGG +C KCV+ RI RAFLIEEQK
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK 101
>BC001773-1|AAH01773.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 126 bits (303), Expect = 4e-29
Identities = 61/101 (60%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
Frame = -1
Query: 371 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 198
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 197 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 75
P RL KK V R YGG +C KCV+ RI RAFLIEEQK
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK 101
>AB061832-1|BAB79470.1| 117|Homo sapiens ribosomal protein L34
protein.
Length = 117
Score = 126 bits (303), Expect = 4e-29
Identities = 61/101 (60%), Positives = 71/101 (70%), Gaps = 2/101 (1%)
Frame = -1
Query: 371 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 198
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 197 PAERSRLCYRKKTVKRVYGGVLCHKCVKQRIVRAFLIEEQK 75
P RL KK V R YGG +C KCV+ RI RAFLIEEQK
Sbjct: 61 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK 101
>AB007181-1|BAA25840.1| 45|Homo sapiens ribosomal protein L34
protein.
Length = 45
Score = 60.1 bits (139), Expect = 3e-09
Identities = 28/44 (63%), Positives = 33/44 (75%), Gaps = 2/44 (4%)
Frame = -1
Query: 362 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CG 237
RLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG
Sbjct: 1 RLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACG 44
>BC037582-1|AAH37582.1| 349|Homo sapiens ATXN7L2 protein protein.
Length = 349
Score = 29.1 bits (62), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 76 FCSSIKKALTMRCLTHLWQRTPP 144
FCS++ L TH+W++ PP
Sbjct: 62 FCSALSSMLERHLSTHMWKKIPP 84
>BC036849-1|AAH36849.1| 580|Homo sapiens ataxin 7-like 2 protein.
Length = 580
Score = 29.1 bits (62), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 76 FCSSIKKALTMRCLTHLWQRTPP 144
FCS++ L TH+W++ PP
Sbjct: 435 FCSALSSMLERHLSTHMWKKIPP 457
>AL355145-2|CAI22938.1| 349|Homo sapiens ataxin 7-like 2 protein.
Length = 349
Score = 29.1 bits (62), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 76 FCSSIKKALTMRCLTHLWQRTPP 144
FCS++ L TH+W++ PP
Sbjct: 62 FCSALSSMLERHLSTHMWKKIPP 84
>AL355145-1|CAI22937.1| 722|Homo sapiens ataxin 7-like 2 protein.
Length = 722
Score = 29.1 bits (62), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 76 FCSSIKKALTMRCLTHLWQRTPP 144
FCS++ L TH+W++ PP
Sbjct: 435 FCSALSSMLERHLSTHMWKKIPP 457
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,031,843
Number of Sequences: 237096
Number of extensions: 1237760
Number of successful extensions: 6926
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6919
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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