Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J08
         (527 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   1.9  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    21   5.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   5.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.8  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.8  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 23  SSLSNRCNYS 52
           SSLSN CNYS
Sbjct: 305 SSLSNSCNYS 314


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 23  SSLSNRCNYSLFSYLFISAHVSKRLRVFC 109
           +S  N C Y+LFS  F  A  S   + FC
Sbjct: 54  NSAINPCIYALFSKDFRFAFKSIICKCFC 82


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 23  SSLSNRCNYSLFSYLFISAHVSKRLRVFC 109
           +S  N C Y+LFS  F  A  S   + FC
Sbjct: 502 NSAINPCIYALFSKDFRFAFKSIICKCFC 530


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 23  SSLSNRCNYSLFSYLFISAHVSKRL 97
           SSLSN  NY+  +Y +   + +K+L
Sbjct: 316 SSLSNNYNYNNNNYKYNYNNYNKKL 340


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -3

Query: 501 YXALNNGPFKDIKTIIVINISTNIM 427
           Y   NN  +KD   +  +N  T+++
Sbjct: 304 YNKFNNNVYKDALIVCTVNSCTSML 328


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 7/25 (28%), Positives = 13/25 (52%)
 Frame = -3

Query: 501 YXALNNGPFKDIKTIIVINISTNIM 427
           Y   NN  +KD   +  +N  T+++
Sbjct: 357 YNKFNNNVYKDALIVCTVNSCTSML 381


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,750
Number of Sequences: 438
Number of extensions: 2053
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)