Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J06
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr...    52   4e-08
SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr 3...    36   0.003
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    23   4.1  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    25   4.3  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    24   9.8  

>SPAC644.13c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 225

 Score = 52.0 bits (119), Expect = 4e-08
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -3

Query: 446 PIILFSTQNTF--LFFLRLVISMIGFIWATFAATKFLGDSQPEGKKALAVYPICLFYFIL 273
           P+++ S    F  L F+R+ + +  + W  FAA   L +S    KK LAVYP+ LFYF L
Sbjct: 160 PLMIASIVCAFVPLIFIRIPVIVAMYAWTLFAAMGVLQNSNLSNKKLLAVYPLFLFYFSL 219

Query: 272 SWLV 261
           +W++
Sbjct: 220 AWII 223


>SPCC61.04c |||Rab GTPase binding|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 227

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = -3

Query: 443 IILFSTQNTFLFFLRLVISMIGFIWATFAATK-FLGDSQPEGKKALAVYPICLFYFILSW 267
           I  F    TF       ++ +  IW T+AA+  F+G  Q    + L  YPI LFY + + 
Sbjct: 162 IAFFKNIFTFNGIAGYALAALACIWCTYAASAMFVGILQVNNMRFLVAYPIALFYGVFAV 221

Query: 266 LVV 258
           + V
Sbjct: 222 ITV 224


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 23.0 bits (47), Expect(2) = 4.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 461 NEFGRPIILFSTQNTFLF 408
           NEFG+ ++ F     FLF
Sbjct: 799 NEFGKHLLFFEAYTKFLF 816



 Score = 20.6 bits (41), Expect(2) = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 359 AATKFLGDSQPEGKKALAVYPICLFYF 279
           A TKFL +S  +G+K  ++    L  F
Sbjct: 810 AYTKFLFESPDQGEKVKSLSAAVLILF 836


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = -3

Query: 377 FIWATFAATKFLGDSQPEGKKALAVYPICLFYFILSWLVVSH 252
           ++W TF + K +G  + E   A +  PI      ++W++  +
Sbjct: 155 YLWTTFLSLKGMGFEESEIFGAFSSIPIVSIDEYITWMITEN 196


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 447 ADHTVQYAEHLPILPEASHIHDRIHLGYFRGN 352
           A+ T   + + PILP+  + + R+H+ YF  N
Sbjct: 691 AERTCTISLNAPILPDDGYAYIRLHV-YFPNN 721


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,761
Number of Sequences: 5004
Number of extensions: 28990
Number of successful extensions: 50
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)