Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P10_pT_J04
         (446 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    23   1.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   2.7  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   6.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.1  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.1  

>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -1

Query: 197 RYQPWISTSENSKLILFKKNSE 132
           R + W++TS      LF +NSE
Sbjct: 271 RVESWVNTSVIRNYTLFNENSE 292


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 19  GSFYVSVSIKFA*YYKTF 72
           GSFY+ + +    YYK F
Sbjct: 209 GSFYIPLFVMIQVYYKIF 226


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 117 CIIMLKILPTYFMTNES 67
           CII L  +P YF T  +
Sbjct: 716 CIIWLAFVPIYFGTGNA 732


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 117 CIIMLKILPTYFMTNES 67
           CII L  +P YF T  +
Sbjct: 806 CIIWLAFVPIYFGTGNA 822


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 185 MVDIFPFSLISSFVIFFPALSTTVEMAAPFMLGPKPAFEAMSWMFDM--PCIKLAGEKLL 358
           + +IFPF ++    +   ++  ++ +  P ++G K     ++  FD+  P I      +L
Sbjct: 208 LFEIFPFCIVFGSDMIVRSIGNSLMVILPDLVGKK-----ITHFFDLVRPLIAFKFHSIL 262

Query: 359 AFIGNMFGSLGTAAP 403
               N+F  L T  P
Sbjct: 263 NRTNNIF-ELVTVEP 276


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 117 CIIMLKILPTYFMTNES 67
           C+I L  +P YF T  +
Sbjct: 858 CVIWLAFVPLYFGTGNN 874


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,226
Number of Sequences: 438
Number of extensions: 2228
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11697255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)